Hb_010080_090

Information

Type -
Description -
Location Contig10080: 113530-115583
Sequence    

Annotation

kegg
ID pop:POPTR_0005s26990g
description POPTRDRAFT_831704; hypothetical protein
nr
ID XP_012073682.1
description PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Jatropha curcas]
swissprot
ID Q8LDK3
description NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 OS=Arabidopsis thaliana GN=At1g76200 PE=3 SV=1
trembl
ID B9H5F0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s26990g PE=4 SV=1
Gene Ontology
ID GO:0005747
description nadh dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00513: 113551-115480
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010080_090 0.0 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Jatropha curcas]
2 Hb_012675_060 0.0546812144 - - hypothetical protein PRUPE_ppa007715mg [Prunus persica]
3 Hb_000834_270 0.0573939893 - - PREDICTED: uncharacterized protein LOC105647032 isoform X2 [Jatropha curcas]
4 Hb_004724_340 0.0715286052 - - PREDICTED: mitochondrial fission protein ELM1 [Jatropha curcas]
5 Hb_002963_010 0.0735104482 - - PREDICTED: autophagy-related protein 18b-like isoform X1 [Jatropha curcas]
6 Hb_004586_320 0.0742729938 - - PREDICTED: bet1-like protein At4g14600 [Jatropha curcas]
7 Hb_001360_050 0.0747481262 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
8 Hb_000010_460 0.079761039 - - hypothetical protein EUGRSUZ_B001502, partial [Eucalyptus grandis]
9 Hb_001083_020 0.0830648196 - - -
10 Hb_000668_040 0.0848215433 - - PREDICTED: random slug protein 5-like [Jatropha curcas]
11 Hb_012753_160 0.0848407836 - - ara4-interacting protein, putative [Ricinus communis]
12 Hb_001832_010 0.0854116426 - - PREDICTED: uncharacterized protein LOC105637890 isoform X1 [Jatropha curcas]
13 Hb_148200_010 0.0857990113 - - hypothetical protein 33 [Hevea brasiliensis]
14 Hb_000146_020 0.0862963036 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
15 Hb_000331_080 0.0866551213 - - PREDICTED: UPF0235 protein At5g63440 isoform X1 [Gossypium raimondii]
16 Hb_156947_010 0.0867605059 - - kinase-like protein pac.x.7.4, partial [Platanus x acerifolia]
17 Hb_000384_100 0.0872080265 - - hydrolase, putative [Ricinus communis]
18 Hb_001722_100 0.0874770961 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000240_090 0.0875273357 - - Rab5 [Hevea brasiliensis]
20 Hb_159809_020 0.0883088661 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_010080_090 Hb_010080_090 Hb_012675_060 Hb_012675_060 Hb_010080_090--Hb_012675_060 Hb_000834_270 Hb_000834_270 Hb_010080_090--Hb_000834_270 Hb_004724_340 Hb_004724_340 Hb_010080_090--Hb_004724_340 Hb_002963_010 Hb_002963_010 Hb_010080_090--Hb_002963_010 Hb_004586_320 Hb_004586_320 Hb_010080_090--Hb_004586_320 Hb_001360_050 Hb_001360_050 Hb_010080_090--Hb_001360_050 Hb_012753_160 Hb_012753_160 Hb_012675_060--Hb_012753_160 Hb_012675_060--Hb_000834_270 Hb_012675_060--Hb_004586_320 Hb_000574_480 Hb_000574_480 Hb_012675_060--Hb_000574_480 Hb_000173_220 Hb_000173_220 Hb_012675_060--Hb_000173_220 Hb_000146_020 Hb_000146_020 Hb_000834_270--Hb_000146_020 Hb_000834_270--Hb_002963_010 Hb_002918_200 Hb_002918_200 Hb_000834_270--Hb_002918_200 Hb_001722_100 Hb_001722_100 Hb_000834_270--Hb_001722_100 Hb_004724_340--Hb_001360_050 Hb_004724_340--Hb_012675_060 Hb_001833_110 Hb_001833_110 Hb_004724_340--Hb_001833_110 Hb_000347_410 Hb_000347_410 Hb_004724_340--Hb_000347_410 Hb_002471_080 Hb_002471_080 Hb_004724_340--Hb_002471_080 Hb_159809_020 Hb_159809_020 Hb_002963_010--Hb_159809_020 Hb_000170_010 Hb_000170_010 Hb_002963_010--Hb_000170_010 Hb_004837_140 Hb_004837_140 Hb_002963_010--Hb_004837_140 Hb_002963_010--Hb_000574_480 Hb_002963_010--Hb_001722_100 Hb_003656_070 Hb_003656_070 Hb_004586_320--Hb_003656_070 Hb_007943_090 Hb_007943_090 Hb_004586_320--Hb_007943_090 Hb_001998_050 Hb_001998_050 Hb_004586_320--Hb_001998_050 Hb_004586_320--Hb_000574_480 Hb_148200_010 Hb_148200_010 Hb_004586_320--Hb_148200_010 Hb_001360_050--Hb_001833_110 Hb_001360_050--Hb_002471_080 Hb_005092_060 Hb_005092_060 Hb_001360_050--Hb_005092_060 Hb_002759_060 Hb_002759_060 Hb_001360_050--Hb_002759_060 Hb_001360_050--Hb_012675_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
89.9035 43.4223 53.8808 38.0602 86.5591 88.8738
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
190.735 206.775 154.284 95.5925 61.1272

CAGE analysis