Hb_010091_040

Information

Type -
Description -
Location Contig10091: 18090-19043
Sequence    

Annotation

kegg
ID cit:102617676
description putative ribonuclease H protein At1g65750-like
nr
ID XP_006475107.1
description PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
swissprot
ID P0C2F6
description Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1
trembl
ID A0A061G4X3
description Non-LTR retroelement reverse transcriptase OS=Theobroma cacao GN=TCM_015876 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010091_040 0.0 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
2 Hb_052764_010 0.0560729594 - - hypothetical protein POPTR_0011s04320g [Populus trichocarpa]
3 Hb_000205_220 0.079588528 - - PREDICTED: uncharacterized protein LOC105647760 [Jatropha curcas]
4 Hb_002284_040 0.1011530279 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
5 Hb_007858_030 0.1357391238 - - retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa Japonica Group]
6 Hb_000002_280 0.1488874512 - - PREDICTED: two-pore potassium channel 1 [Jatropha curcas]
7 Hb_042141_010 0.1591094564 - - -
8 Hb_063869_010 0.1748841843 - - JHL22C18.10 [Jatropha curcas]
9 Hb_011344_150 0.174892504 - - polyprotein [Citrus endogenous pararetrovirus]
10 Hb_002092_140 0.1790839735 - - hypothetical protein EUGRSUZ_B00708, partial [Eucalyptus grandis]
11 Hb_166828_010 0.1822935146 - - -
12 Hb_003867_030 0.1864855533 - - -
13 Hb_080873_010 0.1868564512 - - -
14 Hb_000243_310 0.1916577312 - - lactoylglutathione lyase, putative [Ricinus communis]
15 Hb_002571_050 0.2036939578 - - PREDICTED: cation/calcium exchanger 1 [Jatropha curcas]
16 Hb_000892_040 0.2111785294 - - -
17 Hb_000059_160 0.2117928863 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
18 Hb_006040_080 0.2119536824 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000320_170 0.2125792405 - - conserved hypothetical protein [Ricinus communis]
20 Hb_091913_010 0.22070276 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]

Gene co-expression network

sample Hb_010091_040 Hb_010091_040 Hb_052764_010 Hb_052764_010 Hb_010091_040--Hb_052764_010 Hb_000205_220 Hb_000205_220 Hb_010091_040--Hb_000205_220 Hb_002284_040 Hb_002284_040 Hb_010091_040--Hb_002284_040 Hb_007858_030 Hb_007858_030 Hb_010091_040--Hb_007858_030 Hb_000002_280 Hb_000002_280 Hb_010091_040--Hb_000002_280 Hb_042141_010 Hb_042141_010 Hb_010091_040--Hb_042141_010 Hb_052764_010--Hb_000205_220 Hb_052764_010--Hb_042141_010 Hb_063869_010 Hb_063869_010 Hb_052764_010--Hb_063869_010 Hb_052764_010--Hb_007858_030 Hb_052764_010--Hb_002284_040 Hb_000205_220--Hb_007858_030 Hb_000205_220--Hb_063869_010 Hb_000205_220--Hb_042141_010 Hb_000205_220--Hb_002284_040 Hb_000892_040 Hb_000892_040 Hb_002284_040--Hb_000892_040 Hb_080873_010 Hb_080873_010 Hb_002284_040--Hb_080873_010 Hb_002284_040--Hb_007858_030 Hb_000059_160 Hb_000059_160 Hb_007858_030--Hb_000059_160 Hb_091913_010 Hb_091913_010 Hb_007858_030--Hb_091913_010 Hb_000300_240 Hb_000300_240 Hb_000002_280--Hb_000300_240 Hb_002092_140 Hb_002092_140 Hb_000002_280--Hb_002092_140 Hb_166828_010 Hb_166828_010 Hb_000002_280--Hb_166828_010 Hb_002571_050 Hb_002571_050 Hb_000002_280--Hb_002571_050 Hb_000002_280--Hb_080873_010 Hb_007507_030 Hb_007507_030 Hb_042141_010--Hb_007507_030 Hb_042141_010--Hb_063869_010 Hb_101778_010 Hb_101778_010 Hb_042141_010--Hb_101778_010 Hb_137701_020 Hb_137701_020 Hb_042141_010--Hb_137701_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.340602 0.031202 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.138028

CAGE analysis