Hb_010098_040

Information

Type -
Description -
Location Contig10098: 12981-23554
Sequence    

Annotation

kegg
ID rcu:RCOM_1516900
description DNA-binding protein smubp-2, putative
nr
ID XP_012070287.1
description PREDICTED: DNA-binding protein SMUBP-2 [Jatropha curcas]
swissprot
ID P38935
description DNA-binding protein SMUBP-2 OS=Homo sapiens GN=IGHMBP2 PE=1 SV=3
trembl
ID A0A067KX58
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02598 PE=4 SV=1
Gene Ontology
ID GO:0009570
description dna-binding protein smubp-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00555: 12883-23529
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010098_040 0.0 - - PREDICTED: DNA-binding protein SMUBP-2 [Jatropha curcas]
2 Hb_005181_120 0.0580119373 - - PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_002811_250 0.0752173264 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
4 Hb_000516_080 0.0786247267 - - hypothetical protein POPTR_0010s24810g [Populus trichocarpa]
5 Hb_007982_040 0.0790126879 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
6 Hb_000679_080 0.0826275551 - - PREDICTED: lactation elevated protein 1 isoform X1 [Jatropha curcas]
7 Hb_000684_200 0.0942569855 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
8 Hb_002636_030 0.0990221867 - - hypothetical protein JCGZ_11800 [Jatropha curcas]
9 Hb_000966_040 0.0991593179 - - hypothetical protein JCGZ_01642 [Jatropha curcas]
10 Hb_000193_220 0.1014888998 - - PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic [Jatropha curcas]
11 Hb_000208_270 0.1021097838 - - PREDICTED: malate dehydrogenase [NADP], chloroplastic [Jatropha curcas]
12 Hb_000834_060 0.1033161475 - - PREDICTED: probable chlorophyll(ide) b reductase NYC1, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_000803_170 0.1037012911 - - PREDICTED: uncharacterized protein LOC105648312 [Jatropha curcas]
14 Hb_000975_050 0.1061787459 - - PREDICTED: inner membrane protein PPF-1, chloroplastic [Jatropha curcas]
15 Hb_010721_020 0.1075975944 - - PREDICTED: photosynthetic NDH subunit of lumenal location 4, chloroplastic [Jatropha curcas]
16 Hb_000002_300 0.1113443602 - - Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis]
17 Hb_005977_060 0.112873287 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000108_250 0.1151168057 - - PREDICTED: protochlorophyllide-dependent translocon component 52, chloroplastic-like isoform X1 [Jatropha curcas]
19 Hb_000317_180 0.1159368209 - - PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Jatropha curcas]
20 Hb_000005_100 0.116933313 - - PREDICTED: pheophorbide a oxygenase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_010098_040 Hb_010098_040 Hb_005181_120 Hb_005181_120 Hb_010098_040--Hb_005181_120 Hb_002811_250 Hb_002811_250 Hb_010098_040--Hb_002811_250 Hb_000516_080 Hb_000516_080 Hb_010098_040--Hb_000516_080 Hb_007982_040 Hb_007982_040 Hb_010098_040--Hb_007982_040 Hb_000679_080 Hb_000679_080 Hb_010098_040--Hb_000679_080 Hb_000684_200 Hb_000684_200 Hb_010098_040--Hb_000684_200 Hb_005181_120--Hb_000516_080 Hb_005181_120--Hb_000679_080 Hb_005181_120--Hb_002811_250 Hb_005181_120--Hb_007982_040 Hb_000108_150 Hb_000108_150 Hb_005181_120--Hb_000108_150 Hb_000193_220 Hb_000193_220 Hb_002811_250--Hb_000193_220 Hb_010557_010 Hb_010557_010 Hb_002811_250--Hb_010557_010 Hb_000803_170 Hb_000803_170 Hb_002811_250--Hb_000803_170 Hb_002811_250--Hb_000679_080 Hb_000516_080--Hb_007982_040 Hb_000516_080--Hb_000679_080 Hb_002374_450 Hb_002374_450 Hb_000516_080--Hb_002374_450 Hb_000516_080--Hb_002811_250 Hb_010721_020 Hb_010721_020 Hb_007982_040--Hb_010721_020 Hb_009692_040 Hb_009692_040 Hb_007982_040--Hb_009692_040 Hb_007982_040--Hb_000193_220 Hb_003416_020 Hb_003416_020 Hb_000679_080--Hb_003416_020 Hb_000679_080--Hb_007982_040 Hb_000684_200--Hb_010557_010 Hb_004162_270 Hb_004162_270 Hb_000684_200--Hb_004162_270 Hb_000684_200--Hb_002811_250 Hb_004837_100 Hb_004837_100 Hb_000684_200--Hb_004837_100 Hb_000684_200--Hb_005181_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.7947 10.1131 31.7495 18.4919 1.41445 2.10118
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.93726 2.04851 3.31304 6.05977 59.0572

CAGE analysis