Hb_010098_050

Information

Type -
Description -
Location Contig10098: 26481-30131
Sequence    

Annotation

kegg
ID pop:POPTR_0013s07140g
description POPTRDRAFT_571367; hypothetical protein
nr
ID XP_012070288.1
description PREDICTED: putative deoxyribonuclease tatdn3-A [Jatropha curcas]
swissprot
ID P37545
description Uncharacterized deoxyribonuclease YabD OS=Bacillus subtilis (strain 168) GN=yabD PE=3 SV=1
trembl
ID A0A067L659
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02599 PE=4 SV=1
Gene Ontology
ID GO:0016888
description deoxyribonuclease tatdn3-a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00561: 26484-30117 , PASA_asmbl_00562: 26727-29997
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010098_050 0.0 - - PREDICTED: putative deoxyribonuclease tatdn3-A [Jatropha curcas]
2 Hb_006615_240 0.0495702472 - - PREDICTED: uncharacterized protein LOC105640673 [Jatropha curcas]
3 Hb_001341_150 0.0578639837 - - PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
4 Hb_000205_090 0.0584648665 - - hypothetical protein POPTR_0019s03570g [Populus trichocarpa]
5 Hb_019280_050 0.06728499 - - PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 [Jatropha curcas]
6 Hb_000431_170 0.0675462861 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 511 [Jatropha curcas]
7 Hb_008013_050 0.0684523364 transcription factor TF Family: PHD PREDICTED: PHD finger protein At1g33420 [Jatropha curcas]
8 Hb_003582_060 0.0686456393 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
9 Hb_004109_170 0.0702891786 - - PREDICTED: probable ribokinase [Jatropha curcas]
10 Hb_000460_030 0.0712367319 - - 4-hydroxybenzoate octaprenyltransferase, putative [Ricinus communis]
11 Hb_000656_240 0.0717228609 - - proteasome subunit alpha type, putative [Ricinus communis]
12 Hb_011512_070 0.0726421739 transcription factor TF Family: PHD Inhibitor of growth protein, putative [Ricinus communis]
13 Hb_003151_040 0.0728556482 transcription factor TF Family: Alfin-like zinc finger family protein [Populus trichocarpa]
14 Hb_006059_050 0.0732546443 - - PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]
15 Hb_000336_150 0.0737569784 - - ribulose-5-phosphate-3-epimerase, putative [Ricinus communis]
16 Hb_002226_060 0.0766446777 - - PREDICTED: uncharacterized protein LOC105641377 [Jatropha curcas]
17 Hb_005846_040 0.0782936133 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 [Populus euphratica]
18 Hb_002995_020 0.0791462839 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
19 Hb_000331_470 0.0793682313 - - PREDICTED: uncharacterized protein LOC105136689 [Populus euphratica]
20 Hb_000340_570 0.0796276916 - - PREDICTED: RNA-binding protein BRN1 [Jatropha curcas]

Gene co-expression network

sample Hb_010098_050 Hb_010098_050 Hb_006615_240 Hb_006615_240 Hb_010098_050--Hb_006615_240 Hb_001341_150 Hb_001341_150 Hb_010098_050--Hb_001341_150 Hb_000205_090 Hb_000205_090 Hb_010098_050--Hb_000205_090 Hb_019280_050 Hb_019280_050 Hb_010098_050--Hb_019280_050 Hb_000431_170 Hb_000431_170 Hb_010098_050--Hb_000431_170 Hb_008013_050 Hb_008013_050 Hb_010098_050--Hb_008013_050 Hb_003582_060 Hb_003582_060 Hb_006615_240--Hb_003582_060 Hb_000390_300 Hb_000390_300 Hb_006615_240--Hb_000390_300 Hb_004109_170 Hb_004109_170 Hb_006615_240--Hb_004109_170 Hb_000003_230 Hb_000003_230 Hb_006615_240--Hb_000003_230 Hb_006615_240--Hb_001341_150 Hb_001931_010 Hb_001931_010 Hb_001341_150--Hb_001931_010 Hb_000457_180 Hb_000457_180 Hb_001341_150--Hb_000457_180 Hb_002078_140 Hb_002078_140 Hb_001341_150--Hb_002078_140 Hb_028396_010 Hb_028396_010 Hb_001341_150--Hb_028396_010 Hb_000205_090--Hb_004109_170 Hb_118419_010 Hb_118419_010 Hb_000205_090--Hb_118419_010 Hb_000236_040 Hb_000236_040 Hb_000205_090--Hb_000236_040 Hb_000656_240 Hb_000656_240 Hb_000205_090--Hb_000656_240 Hb_004116_190 Hb_004116_190 Hb_000205_090--Hb_004116_190 Hb_001470_030 Hb_001470_030 Hb_019280_050--Hb_001470_030 Hb_000729_030 Hb_000729_030 Hb_019280_050--Hb_000729_030 Hb_000373_070 Hb_000373_070 Hb_019280_050--Hb_000373_070 Hb_003124_150 Hb_003124_150 Hb_019280_050--Hb_003124_150 Hb_019280_050--Hb_008013_050 Hb_000948_160 Hb_000948_160 Hb_000431_170--Hb_000948_160 Hb_006693_020 Hb_006693_020 Hb_000431_170--Hb_006693_020 Hb_000081_160 Hb_000081_160 Hb_000431_170--Hb_000081_160 Hb_000460_030 Hb_000460_030 Hb_000431_170--Hb_000460_030 Hb_000431_170--Hb_000390_300 Hb_006059_050 Hb_006059_050 Hb_008013_050--Hb_006059_050 Hb_002301_150 Hb_002301_150 Hb_008013_050--Hb_002301_150 Hb_003502_060 Hb_003502_060 Hb_008013_050--Hb_003502_060 Hb_003151_040 Hb_003151_040 Hb_008013_050--Hb_003151_040 Hb_000030_030 Hb_000030_030 Hb_008013_050--Hb_000030_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.4905 10.3802 17.0475 12.6737 10.3972 10.7944
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.1297 26.984 17.1185 14.7008 11.1737

CAGE analysis