Hb_010098_060

Information

Type -
Description -
Location Contig10098: 31539-33427
Sequence    

Annotation

kegg
ID rcu:RCOM_1516880
description protein binding protein, putative
nr
ID XP_012070292.1
description PREDICTED: BTB/POZ domain-containing protein At5g17580 [Jatropha curcas]
swissprot
ID Q9LF66
description BTB/POZ domain-containing protein At5g17580 OS=Arabidopsis thaliana GN=At5g17580 PE=2 SV=1
trembl
ID A0A067L500
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02600 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010098_060 0.0 - - PREDICTED: BTB/POZ domain-containing protein At5g17580 [Jatropha curcas]
2 Hb_003462_080 0.1699807293 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
3 Hb_001148_060 0.212577391 - - hypothetical protein JCGZ_00278 [Jatropha curcas]
4 Hb_001864_080 0.2224694225 - - PREDICTED: uncharacterized protein LOC105649405 [Jatropha curcas]
5 Hb_000246_130 0.2236637891 - - tubulin alpha chain, putative [Ricinus communis]
6 Hb_000221_090 0.2284587787 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Jatropha curcas]
7 Hb_116702_010 0.2318618896 - - Leucine-rich repeat protein kinase family protein [Theobroma cacao]
8 Hb_002820_150 0.2342988369 - - zinc finger protein, putative [Ricinus communis]
9 Hb_001195_070 0.2346026193 - - PREDICTED: protein RER1B-like [Jatropha curcas]
10 Hb_000390_190 0.2358235935 - - ATP binding protein, putative [Ricinus communis]
11 Hb_019837_020 0.2363502267 - - -
12 Hb_000496_110 0.237133751 - - PREDICTED: uncharacterized protein LOC105650214 [Jatropha curcas]
13 Hb_002542_060 0.2374804078 - - PREDICTED: wee1-like protein kinase [Jatropha curcas]
14 Hb_003226_250 0.2378192276 - - PREDICTED: UDP-glucuronic acid decarboxylase 2 [Jatropha curcas]
15 Hb_000370_070 0.2394331693 - - PREDICTED: subtilisin-like protease-like [Citrus sinensis]
16 Hb_003687_250 0.2400761497 - - PREDICTED: phosphoenolpyruvate carboxylase kinase 1-like [Jatropha curcas]
17 Hb_000320_350 0.2402350456 - - hypothetical protein RCOM_0904330 [Ricinus communis]
18 Hb_000291_290 0.2430853845 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000256_080 0.2432101989 - - PREDICTED: deSI-like protein At4g17486 [Jatropha curcas]
20 Hb_000086_390 0.2441612761 - - PREDICTED: uncharacterized protein LOC105644503 [Jatropha curcas]

Gene co-expression network

sample Hb_010098_060 Hb_010098_060 Hb_003462_080 Hb_003462_080 Hb_010098_060--Hb_003462_080 Hb_001148_060 Hb_001148_060 Hb_010098_060--Hb_001148_060 Hb_001864_080 Hb_001864_080 Hb_010098_060--Hb_001864_080 Hb_000246_130 Hb_000246_130 Hb_010098_060--Hb_000246_130 Hb_000221_090 Hb_000221_090 Hb_010098_060--Hb_000221_090 Hb_116702_010 Hb_116702_010 Hb_010098_060--Hb_116702_010 Hb_011310_180 Hb_011310_180 Hb_003462_080--Hb_011310_180 Hb_000808_150 Hb_000808_150 Hb_003462_080--Hb_000808_150 Hb_003462_080--Hb_000246_130 Hb_004449_250 Hb_004449_250 Hb_003462_080--Hb_004449_250 Hb_011360_110 Hb_011360_110 Hb_003462_080--Hb_011360_110 Hb_000320_350 Hb_000320_350 Hb_003462_080--Hb_000320_350 Hb_002759_100 Hb_002759_100 Hb_001148_060--Hb_002759_100 Hb_005305_120 Hb_005305_120 Hb_001148_060--Hb_005305_120 Hb_172632_130 Hb_172632_130 Hb_001148_060--Hb_172632_130 Hb_021409_070 Hb_021409_070 Hb_001148_060--Hb_021409_070 Hb_000270_830 Hb_000270_830 Hb_001148_060--Hb_000270_830 Hb_007793_050 Hb_007793_050 Hb_001148_060--Hb_007793_050 Hb_000291_290 Hb_000291_290 Hb_001864_080--Hb_000291_290 Hb_000256_080 Hb_000256_080 Hb_001864_080--Hb_000256_080 Hb_000962_070 Hb_000962_070 Hb_001864_080--Hb_000962_070 Hb_000069_360 Hb_000069_360 Hb_001864_080--Hb_000069_360 Hb_000390_190 Hb_000390_190 Hb_001864_080--Hb_000390_190 Hb_000096_190 Hb_000096_190 Hb_001864_080--Hb_000096_190 Hb_019516_060 Hb_019516_060 Hb_000246_130--Hb_019516_060 Hb_000030_130 Hb_000030_130 Hb_000246_130--Hb_000030_130 Hb_001102_160 Hb_001102_160 Hb_000246_130--Hb_001102_160 Hb_030565_100 Hb_030565_100 Hb_000246_130--Hb_030565_100 Hb_002316_080 Hb_002316_080 Hb_000246_130--Hb_002316_080 Hb_084147_010 Hb_084147_010 Hb_000246_130--Hb_084147_010 Hb_000065_090 Hb_000065_090 Hb_000221_090--Hb_000065_090 Hb_000370_070 Hb_000370_070 Hb_000221_090--Hb_000370_070 Hb_004013_020 Hb_004013_020 Hb_000221_090--Hb_004013_020 Hb_000797_060 Hb_000797_060 Hb_000221_090--Hb_000797_060 Hb_002289_150 Hb_002289_150 Hb_000221_090--Hb_002289_150 Hb_000579_030 Hb_000579_030 Hb_000221_090--Hb_000579_030 Hb_000000_310 Hb_000000_310 Hb_116702_010--Hb_000000_310 Hb_000138_060 Hb_000138_060 Hb_116702_010--Hb_000138_060 Hb_026549_070 Hb_026549_070 Hb_116702_010--Hb_026549_070 Hb_005192_010 Hb_005192_010 Hb_116702_010--Hb_005192_010 Hb_001969_140 Hb_001969_140 Hb_116702_010--Hb_001969_140 Hb_011828_010 Hb_011828_010 Hb_116702_010--Hb_011828_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.209893 0.152932 0.132823 0.611219 0.0117239 0.0102527
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0532605 0.18857 0.039559 0.0333945 0.48476

CAGE analysis