Hb_010098_070

Information

Type -
Description -
Location Contig10098: 34108-34689
Sequence    

Annotation

kegg
ID rcu:RCOM_1516870
description hypothetical protein
nr
ID XP_002524009.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SDE0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1516870 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00564: 35186-37491
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010098_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000127_020 0.1849714111 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
3 Hb_002477_230 0.1979703957 - - PREDICTED: verprolin [Jatropha curcas]
4 Hb_007810_050 0.2175839219 - - protein with unknown function [Ricinus communis]
5 Hb_175445_010 0.2235631353 - - Pectin methylesterase 31 isoform 2, partial [Theobroma cacao]
6 Hb_003073_140 0.2261877252 - - F-box family protein [Theobroma cacao]
7 Hb_007849_030 0.2295907755 - - l-allo-threonine aldolase, putative [Ricinus communis]
8 Hb_000029_270 0.2412421065 - - PREDICTED: uncharacterized protein LOC105634361 [Jatropha curcas]
9 Hb_003253_010 0.2454904376 - - PREDICTED: uncharacterized protein LOC105111108 [Populus euphratica]
10 Hb_000018_190 0.2542503037 - - tocopherol cyclase [Hevea brasiliensis]
11 Hb_010589_110 0.256807055 - - PREDICTED: pumilio homolog 12-like [Jatropha curcas]
12 Hb_003747_030 0.2612080928 - - PREDICTED: pentatricopeptide repeat-containing protein At3g26630, chloroplastic-like [Jatropha curcas]
13 Hb_001315_020 0.2637757104 - - ring finger protein, putative [Ricinus communis]
14 Hb_002928_110 0.2668263451 - - PREDICTED: uncharacterized protein LOC105635235 [Jatropha curcas]
15 Hb_092706_020 0.2687722164 - - PREDICTED: uncharacterized protein LOC105637876 isoform X1 [Jatropha curcas]
16 Hb_002505_050 0.2730431799 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
17 Hb_003893_040 0.276805675 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
18 Hb_003756_010 0.2781752333 - - PREDICTED: uncharacterized protein LOC105642108 [Jatropha curcas]
19 Hb_116349_150 0.2786676633 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
20 Hb_010098_080 0.2811855072 - - PREDICTED: non-specific phospholipase C4-like [Jatropha curcas]

Gene co-expression network

sample Hb_010098_070 Hb_010098_070 Hb_000127_020 Hb_000127_020 Hb_010098_070--Hb_000127_020 Hb_002477_230 Hb_002477_230 Hb_010098_070--Hb_002477_230 Hb_007810_050 Hb_007810_050 Hb_010098_070--Hb_007810_050 Hb_175445_010 Hb_175445_010 Hb_010098_070--Hb_175445_010 Hb_003073_140 Hb_003073_140 Hb_010098_070--Hb_003073_140 Hb_007849_030 Hb_007849_030 Hb_010098_070--Hb_007849_030 Hb_004522_040 Hb_004522_040 Hb_000127_020--Hb_004522_040 Hb_000123_110 Hb_000123_110 Hb_000127_020--Hb_000123_110 Hb_000127_020--Hb_002477_230 Hb_000029_270 Hb_000029_270 Hb_000127_020--Hb_000029_270 Hb_000163_290 Hb_000163_290 Hb_000127_020--Hb_000163_290 Hb_003253_010 Hb_003253_010 Hb_002477_230--Hb_003253_010 Hb_002477_230--Hb_007810_050 Hb_002477_230--Hb_007849_030 Hb_002388_060 Hb_002388_060 Hb_002477_230--Hb_002388_060 Hb_002477_230--Hb_175445_010 Hb_010098_080 Hb_010098_080 Hb_002477_230--Hb_010098_080 Hb_007810_050--Hb_003253_010 Hb_003777_070 Hb_003777_070 Hb_007810_050--Hb_003777_070 Hb_007810_050--Hb_010098_080 Hb_001980_020 Hb_001980_020 Hb_007810_050--Hb_001980_020 Hb_007810_050--Hb_175445_010 Hb_003756_010 Hb_003756_010 Hb_175445_010--Hb_003756_010 Hb_175445_010--Hb_003253_010 Hb_175445_010--Hb_001980_020 Hb_004060_010 Hb_004060_010 Hb_175445_010--Hb_004060_010 Hb_175445_010--Hb_010098_080 Hb_004724_040 Hb_004724_040 Hb_003073_140--Hb_004724_040 Hb_000295_120 Hb_000295_120 Hb_003073_140--Hb_000295_120 Hb_015807_140 Hb_015807_140 Hb_003073_140--Hb_015807_140 Hb_006469_060 Hb_006469_060 Hb_003073_140--Hb_006469_060 Hb_008066_040 Hb_008066_040 Hb_003073_140--Hb_008066_040 Hb_007849_030--Hb_001980_020 Hb_007849_030--Hb_003253_010 Hb_007849_030--Hb_175445_010 Hb_007849_030--Hb_007810_050 Hb_007849_030--Hb_003777_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.05222 0 0.0737935 0.0508208 0.213585 0.434739
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.211385 1.2459 0.722995 0.136506 0

CAGE analysis