Hb_010120_010

Information

Type -
Description -
Location Contig10120: 29135-30921
Sequence    

Annotation

kegg
ID sly:104646181
description uncharacterized LOC104646181
nr
ID XP_012072612.1
description PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID Q6L428
description Putative integrase, identical OS=Solanum demissum GN=SDM1_26t00011 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010120_010 0.0 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
2 Hb_001369_330 0.0006623969 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004881_110 0.0007356552 - - -
4 Hb_010267_010 0.0008893822 - - -
5 Hb_000265_180 0.0025518077 - - Alpha/beta-Hydrolases superfamily protein, putative [Theobroma cacao]
6 Hb_003388_090 0.003423723 - - putative beta-D-xylosidase 5 -like protein [Gossypium arboreum]
7 Hb_000258_190 0.0039089155 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
8 Hb_000143_040 0.0044773486 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
9 Hb_011016_040 0.0045019601 - - calcium-dependent protein kinase, putative [Ricinus communis]
10 Hb_035492_010 0.0219399449 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
11 Hb_000635_120 0.0254979676 - - -
12 Hb_001999_110 0.0256141393 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Populus euphratica]
13 Hb_011457_060 0.0266305525 - - PREDICTED: uncharacterized protein LOC105649957 [Jatropha curcas]
14 Hb_012368_060 0.0270452597 - - -
15 Hb_187134_010 0.1005962954 - - -
16 Hb_007273_010 0.1086270616 - - PREDICTED: 60S acidic ribosomal protein P2B-like [Populus euphratica]
17 Hb_185736_010 0.1200737726 - - -
18 Hb_083103_030 0.1344743846 - - putative retrotransposon protein [Malus domestica]
19 Hb_103832_030 0.138286864 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
20 Hb_172503_010 0.1390787582 - - PREDICTED: uncharacterized protein LOC105647154 [Jatropha curcas]

Gene co-expression network

sample Hb_010120_010 Hb_010120_010 Hb_001369_330 Hb_001369_330 Hb_010120_010--Hb_001369_330 Hb_004881_110 Hb_004881_110 Hb_010120_010--Hb_004881_110 Hb_010267_010 Hb_010267_010 Hb_010120_010--Hb_010267_010 Hb_000265_180 Hb_000265_180 Hb_010120_010--Hb_000265_180 Hb_003388_090 Hb_003388_090 Hb_010120_010--Hb_003388_090 Hb_000258_190 Hb_000258_190 Hb_010120_010--Hb_000258_190 Hb_001369_330--Hb_004881_110 Hb_001369_330--Hb_010267_010 Hb_001369_330--Hb_000265_180 Hb_001369_330--Hb_003388_090 Hb_001369_330--Hb_000258_190 Hb_004881_110--Hb_010267_010 Hb_004881_110--Hb_000265_180 Hb_004881_110--Hb_003388_090 Hb_004881_110--Hb_000258_190 Hb_010267_010--Hb_000265_180 Hb_010267_010--Hb_003388_090 Hb_010267_010--Hb_000258_190 Hb_000265_180--Hb_003388_090 Hb_000265_180--Hb_000258_190 Hb_000143_040 Hb_000143_040 Hb_000265_180--Hb_000143_040 Hb_011016_040 Hb_011016_040 Hb_000265_180--Hb_011016_040 Hb_003388_090--Hb_000258_190 Hb_003388_090--Hb_000143_040 Hb_003388_090--Hb_011016_040 Hb_000258_190--Hb_000143_040 Hb_000258_190--Hb_011016_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0714002 0 0.0291639 0

CAGE analysis