Hb_010120_030

Information

Type -
Description -
Location Contig10120: 101131-104675
Sequence    

Annotation

kegg
ID pop:POPTR_0016s01150g
description hypothetical protein
nr
ID XP_012074030.1
description PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
swissprot
ID Q8W034
description Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana GN=RNP1 PE=1 SV=1
trembl
ID A0A067KN54
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09513 PE=4 SV=1
Gene Ontology
ID GO:0019013
description heterogeneous nuclear ribonucleoprotein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00630: 101180-106230 , PASA_asmbl_00631: 101395-101907
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010120_030 0.0 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
2 Hb_003656_130 0.0724697165 - - PREDICTED: protein bem46 isoform X2 [Jatropha curcas]
3 Hb_022137_060 0.0735864839 - - 1-acylglycerophosphocholine O-acyltransferase [Vernicia fordii]
4 Hb_000012_090 0.0827571429 - - 3'-5' exonuclease, putative [Ricinus communis]
5 Hb_000529_160 0.08427156 - - PREDICTED: uncharacterized protein At1g04910 [Populus euphratica]
6 Hb_000049_040 0.0842989707 - - PREDICTED: uncharacterized protein LOC105644475 [Jatropha curcas]
7 Hb_000365_310 0.0846052231 - - auxin:hydrogen symporter, putative [Ricinus communis]
8 Hb_002149_020 0.0853205211 - - PREDICTED: uncharacterized protein LOC105647982 isoform X2 [Jatropha curcas]
9 Hb_000386_040 0.0859208108 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
10 Hb_000363_500 0.0868209603 - - PREDICTED: EH domain-containing protein 1 isoform X2 [Jatropha curcas]
11 Hb_000943_070 0.0875469775 - - PREDICTED: uncharacterized protein LOC105635592 isoform X1 [Jatropha curcas]
12 Hb_005063_040 0.0882128561 - - PREDICTED: E3 ubiquitin protein ligase DRIP2-like isoform X1 [Jatropha curcas]
13 Hb_000009_170 0.0907121568 - - dolichyl-diphosphooligosaccharide--protein glycosyltransferase, putative [Ricinus communis]
14 Hb_001124_210 0.0908375962 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003502_080 0.0913188662 - - vacuolar protein sorting, putative [Ricinus communis]
16 Hb_033843_010 0.0914407935 - - PREDICTED: cell division control protein 2 homolog A isoform X1 [Jatropha curcas]
17 Hb_000179_170 0.0924881595 - - PREDICTED: protein bem46 isoform X1 [Jatropha curcas]
18 Hb_002014_080 0.0926136344 - - PREDICTED: tankyrase-1 isoform X4 [Jatropha curcas]
19 Hb_006922_080 0.0952285895 - - PREDICTED: E3 ubiquitin-protein ligase SINAT3-like [Glycine max]
20 Hb_001006_170 0.0962470071 - - Endonuclease V, putative [Ricinus communis]

Gene co-expression network

sample Hb_010120_030 Hb_010120_030 Hb_003656_130 Hb_003656_130 Hb_010120_030--Hb_003656_130 Hb_022137_060 Hb_022137_060 Hb_010120_030--Hb_022137_060 Hb_000012_090 Hb_000012_090 Hb_010120_030--Hb_000012_090 Hb_000529_160 Hb_000529_160 Hb_010120_030--Hb_000529_160 Hb_000049_040 Hb_000049_040 Hb_010120_030--Hb_000049_040 Hb_000365_310 Hb_000365_310 Hb_010120_030--Hb_000365_310 Hb_003656_130--Hb_000012_090 Hb_018790_030 Hb_018790_030 Hb_003656_130--Hb_018790_030 Hb_000956_030 Hb_000956_030 Hb_003656_130--Hb_000956_030 Hb_000803_300 Hb_000803_300 Hb_003656_130--Hb_000803_300 Hb_002149_020 Hb_002149_020 Hb_003656_130--Hb_002149_020 Hb_006663_100 Hb_006663_100 Hb_022137_060--Hb_006663_100 Hb_000120_800 Hb_000120_800 Hb_022137_060--Hb_000120_800 Hb_000359_170 Hb_000359_170 Hb_022137_060--Hb_000359_170 Hb_000009_170 Hb_000009_170 Hb_022137_060--Hb_000009_170 Hb_012760_170 Hb_012760_170 Hb_022137_060--Hb_012760_170 Hb_028639_060 Hb_028639_060 Hb_000012_090--Hb_028639_060 Hb_006922_080 Hb_006922_080 Hb_000012_090--Hb_006922_080 Hb_003728_020 Hb_003728_020 Hb_000012_090--Hb_003728_020 Hb_003453_020 Hb_003453_020 Hb_000012_090--Hb_003453_020 Hb_002014_080 Hb_002014_080 Hb_000012_090--Hb_002014_080 Hb_003602_040 Hb_003602_040 Hb_000012_090--Hb_003602_040 Hb_000529_160--Hb_000365_310 Hb_000299_040 Hb_000299_040 Hb_000529_160--Hb_000299_040 Hb_000179_170 Hb_000179_170 Hb_000529_160--Hb_000179_170 Hb_076787_010 Hb_076787_010 Hb_000529_160--Hb_076787_010 Hb_000529_160--Hb_022137_060 Hb_000386_040 Hb_000386_040 Hb_000049_040--Hb_000386_040 Hb_182026_020 Hb_182026_020 Hb_000049_040--Hb_182026_020 Hb_000049_040--Hb_002014_080 Hb_007919_050 Hb_007919_050 Hb_000049_040--Hb_007919_050 Hb_010174_130 Hb_010174_130 Hb_000049_040--Hb_010174_130 Hb_002112_040 Hb_002112_040 Hb_000365_310--Hb_002112_040 Hb_000363_500 Hb_000363_500 Hb_000365_310--Hb_000363_500 Hb_002616_050 Hb_002616_050 Hb_000365_310--Hb_002616_050 Hb_001998_230 Hb_001998_230 Hb_000365_310--Hb_001998_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
43.3826 11.349 13.059 26.2296 54.4973 58.2847
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
52.1928 26.9708 38.093 16.8684 8.95324

CAGE analysis