Hb_010121_020

Information

Type -
Description -
Location Contig10121: 38404-43510
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_009787832.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
swissprot
ID P04323
description Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010121_020 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
2 Hb_001844_010 0.2307100281 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
3 Hb_076836_010 0.2307112899 - - PREDICTED: uncharacterized protein LOC104801925 [Tarenaya hassleriana]
4 Hb_002478_050 0.2307112949 - - K(+)/H(+) antiporter, putative [Ricinus communis]
5 Hb_000485_060 0.2307166277 - - PREDICTED: uncharacterized protein LOC105641351 [Jatropha curcas]
6 Hb_005781_010 0.230735335 - - PREDICTED: probable terpene synthase 6 [Jatropha curcas]
7 Hb_006094_010 0.2307480272 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
8 Hb_177166_010 0.2307800504 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
9 Hb_003828_010 0.2308036117 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
10 Hb_064445_030 0.2308091661 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
11 Hb_024446_010 0.2308350093 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
12 Hb_003504_050 0.2315171484 - - hypothetical protein JCGZ_23540 [Jatropha curcas]
13 Hb_004772_010 0.232323776 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
14 Hb_011206_030 0.2331020635 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
15 Hb_048953_010 0.2331020635 - - PREDICTED: uncharacterized protein LOC105775428 [Gossypium raimondii]
16 Hb_006267_050 0.2339177148 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
17 Hb_001595_060 0.2340013104 - - hypothetical protein L484_001429 [Morus notabilis]
18 Hb_041813_020 0.2344646898 - - ATP synthase epsilon subunit [Grubbia rosmarinifolia]
19 Hb_002325_080 0.2375964939 - - -
20 Hb_004116_010 0.2421415911 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_010121_020 Hb_010121_020 Hb_001844_010 Hb_001844_010 Hb_010121_020--Hb_001844_010 Hb_076836_010 Hb_076836_010 Hb_010121_020--Hb_076836_010 Hb_002478_050 Hb_002478_050 Hb_010121_020--Hb_002478_050 Hb_000485_060 Hb_000485_060 Hb_010121_020--Hb_000485_060 Hb_005781_010 Hb_005781_010 Hb_010121_020--Hb_005781_010 Hb_006094_010 Hb_006094_010 Hb_010121_020--Hb_006094_010 Hb_001844_010--Hb_076836_010 Hb_001844_010--Hb_002478_050 Hb_001844_010--Hb_000485_060 Hb_001844_010--Hb_005781_010 Hb_001844_010--Hb_006094_010 Hb_177166_010 Hb_177166_010 Hb_001844_010--Hb_177166_010 Hb_076836_010--Hb_002478_050 Hb_076836_010--Hb_000485_060 Hb_076836_010--Hb_005781_010 Hb_076836_010--Hb_006094_010 Hb_076836_010--Hb_177166_010 Hb_002478_050--Hb_000485_060 Hb_002478_050--Hb_005781_010 Hb_002478_050--Hb_006094_010 Hb_002478_050--Hb_177166_010 Hb_000485_060--Hb_005781_010 Hb_000485_060--Hb_006094_010 Hb_000485_060--Hb_177166_010 Hb_005781_010--Hb_006094_010 Hb_005781_010--Hb_177166_010 Hb_003828_010 Hb_003828_010 Hb_005781_010--Hb_003828_010 Hb_064445_030 Hb_064445_030 Hb_005781_010--Hb_064445_030 Hb_006094_010--Hb_177166_010 Hb_006094_010--Hb_003828_010 Hb_006094_010--Hb_064445_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.00451116 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0147535 0 0 0 0.0247635

CAGE analysis