Hb_010128_070

Information

Type -
Description -
Location Contig10128: 51284-55279
Sequence    

Annotation

kegg
ID rcu:RCOM_1436620
description nucleic acid binding protein, putative
nr
ID XP_002512575.1
description nucleic acid binding protein, putative [Ricinus communis]
swissprot
ID E1BZ85
description Meiosis arrest female protein 1 homolog OS=Gallus gallus GN=MARF1 PE=3 SV=1
trembl
ID B9RFQ6
description Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_1436620 PE=4 SV=1
Gene Ontology
ID GO:0005777
description endonuclease or glycosyl hydrolase with c2h2-type zinc finger isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00639: 51407-55515
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010128_070 0.0 - - nucleic acid binding protein, putative [Ricinus communis]
2 Hb_003106_150 0.0749936896 - - PREDICTED: U-box domain-containing protein 38-like [Jatropha curcas]
3 Hb_000281_010 0.0861065089 - - hypothetical protein JCGZ_16194 [Jatropha curcas]
4 Hb_017075_030 0.1095024036 - - helicase, putative [Ricinus communis]
5 Hb_009620_030 0.1107213534 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP59 [Jatropha curcas]
6 Hb_006615_100 0.1174533354 - - PREDICTED: uncharacterized protein LOC105640683 isoform X1 [Jatropha curcas]
7 Hb_000116_460 0.125643664 - - PREDICTED: plant intracellular Ras-group-related LRR protein 4 [Jatropha curcas]
8 Hb_003064_030 0.1326779233 - - bromodomain-containing protein, putative [Ricinus communis]
9 Hb_000120_510 0.1359689739 - - PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isoform X1 [Jatropha curcas]
10 Hb_004017_040 0.1360567841 - - kinetochore protein nuf2, putative [Ricinus communis]
11 Hb_001946_240 0.1370698774 - - PREDICTED: chaperone protein dnaJ 49-like [Jatropha curcas]
12 Hb_080147_040 0.1373620988 - - hypothetical protein JCGZ_07266 [Jatropha curcas]
13 Hb_000504_160 0.1374249449 - - hypothetical protein POPTR_0001s35340g [Populus trichocarpa]
14 Hb_009646_050 0.137996416 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001946_300 0.1382284303 - - PREDICTED: F-box protein At-B [Jatropha curcas]
16 Hb_110482_010 0.1385821009 - - hypothetical protein JCGZ_16907 [Jatropha curcas]
17 Hb_033594_020 0.1391677359 - - PREDICTED: ruvB-like 2 [Jatropha curcas]
18 Hb_000270_560 0.139291257 - - PREDICTED: U-box domain-containing protein 38-like [Jatropha curcas]
19 Hb_002675_040 0.1393428843 - - ran-binding protein, putative [Ricinus communis]
20 Hb_155702_010 0.1396227347 - - Tetraspanin-5 [Gossypium arboreum]

Gene co-expression network

sample Hb_010128_070 Hb_010128_070 Hb_003106_150 Hb_003106_150 Hb_010128_070--Hb_003106_150 Hb_000281_010 Hb_000281_010 Hb_010128_070--Hb_000281_010 Hb_017075_030 Hb_017075_030 Hb_010128_070--Hb_017075_030 Hb_009620_030 Hb_009620_030 Hb_010128_070--Hb_009620_030 Hb_006615_100 Hb_006615_100 Hb_010128_070--Hb_006615_100 Hb_000116_460 Hb_000116_460 Hb_010128_070--Hb_000116_460 Hb_003106_150--Hb_017075_030 Hb_002849_080 Hb_002849_080 Hb_003106_150--Hb_002849_080 Hb_001157_180 Hb_001157_180 Hb_003106_150--Hb_001157_180 Hb_000504_160 Hb_000504_160 Hb_003106_150--Hb_000504_160 Hb_010128_090 Hb_010128_090 Hb_003106_150--Hb_010128_090 Hb_000281_010--Hb_000116_460 Hb_000685_080 Hb_000685_080 Hb_000281_010--Hb_000685_080 Hb_001946_240 Hb_001946_240 Hb_000281_010--Hb_001946_240 Hb_009646_050 Hb_009646_050 Hb_000281_010--Hb_009646_050 Hb_000281_010--Hb_003106_150 Hb_033883_060 Hb_033883_060 Hb_017075_030--Hb_033883_060 Hb_000406_240 Hb_000406_240 Hb_017075_030--Hb_000406_240 Hb_031042_070 Hb_031042_070 Hb_017075_030--Hb_031042_070 Hb_001946_300 Hb_001946_300 Hb_017075_030--Hb_001946_300 Hb_003878_140 Hb_003878_140 Hb_017075_030--Hb_003878_140 Hb_080147_040 Hb_080147_040 Hb_009620_030--Hb_080147_040 Hb_001900_120 Hb_001900_120 Hb_009620_030--Hb_001900_120 Hb_017895_020 Hb_017895_020 Hb_009620_030--Hb_017895_020 Hb_147737_010 Hb_147737_010 Hb_009620_030--Hb_147737_010 Hb_002675_040 Hb_002675_040 Hb_009620_030--Hb_002675_040 Hb_006588_050 Hb_006588_050 Hb_009620_030--Hb_006588_050 Hb_007680_020 Hb_007680_020 Hb_006615_100--Hb_007680_020 Hb_006615_100--Hb_000281_010 Hb_001195_150 Hb_001195_150 Hb_006615_100--Hb_001195_150 Hb_000997_410 Hb_000997_410 Hb_006615_100--Hb_000997_410 Hb_002804_050 Hb_002804_050 Hb_006615_100--Hb_002804_050 Hb_000116_460--Hb_001946_240 Hb_004920_060 Hb_004920_060 Hb_000116_460--Hb_004920_060 Hb_001473_080 Hb_001473_080 Hb_000116_460--Hb_001473_080 Hb_010883_080 Hb_010883_080 Hb_000116_460--Hb_010883_080 Hb_000116_460--Hb_002675_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
127.595 71.7088 30.5274 16.2752 57.4105 71.2366
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.2386 9.25528 20.1748 21.4723 12.8448

CAGE analysis