Hb_010128_100

Information

Type -
Description -
Location Contig10128: 71608-72987
Sequence    

Annotation

kegg
ID rcu:RCOM_1436650
description cysteine desulfurylase, putative (EC:5.1.1.17)
nr
ID XP_012088823.1
description PREDICTED: probable L-cysteine desulfhydrase, chloroplastic [Jatropha curcas]
swissprot
ID Q3E6S9
description Probable L-cysteine desulfhydrase, chloroplastic OS=Arabidopsis thaliana GN=CpNIFS3 PE=1 SV=1
trembl
ID A0A067JTL2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23168 PE=3 SV=1
Gene Ontology
ID GO:0030170
description l-cysteine desulfhydrase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00654: 69533-72229
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010128_100 0.0 - - PREDICTED: probable L-cysteine desulfhydrase, chloroplastic [Jatropha curcas]
2 Hb_000483_300 0.1027619402 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Populus euphratica]
3 Hb_001269_190 0.1057189028 - - PREDICTED: Golgi SNAP receptor complex member 1-1 [Jatropha curcas]
4 Hb_023371_020 0.1161877675 - - PREDICTED: uncharacterized protein LOC105633512 [Jatropha curcas]
5 Hb_001951_150 0.1165118029 - - PREDICTED: uncharacterized protein LOC105649758 [Jatropha curcas]
6 Hb_001141_420 0.1180221364 - - PREDICTED: uncharacterized protein LOC105631978 isoform X1 [Jatropha curcas]
7 Hb_001512_010 0.1209586832 - - PREDICTED: uncharacterized protein LOC105633759 [Jatropha curcas]
8 Hb_000362_190 0.1240219706 - - PREDICTED: 28 kDa heat- and acid-stable phosphoprotein [Jatropha curcas]
9 Hb_000917_230 0.1242268876 - - PREDICTED: coiled-coil domain-containing protein 130-like [Jatropha curcas]
10 Hb_008103_050 0.1254012846 - - hypothetical protein JCGZ_07422 [Jatropha curcas]
11 Hb_015934_120 0.1255881986 - - PREDICTED: callose synthase 7 [Vitis vinifera]
12 Hb_004157_050 0.1261016686 - - PREDICTED: uncharacterized protein LOC105628218 isoform X1 [Jatropha curcas]
13 Hb_001999_210 0.1263953887 - - PREDICTED: sodium-dependent phosphate transport protein 1, chloroplastic [Eucalyptus grandis]
14 Hb_001269_610 0.127650015 - - Chaperone protein dnaJ 8, chloroplast precursor, putative [Ricinus communis]
15 Hb_002820_020 0.1283253642 - - hypothetical protein VITISV_005587 [Vitis vinifera]
16 Hb_000061_120 0.1296880496 - - PREDICTED: dnaJ homolog subfamily C member 16 [Jatropha curcas]
17 Hb_000029_140 0.1310272505 - - PREDICTED: putative GDP-L-fucose synthase 2 [Populus euphratica]
18 Hb_000087_070 0.1311086671 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
19 Hb_000590_120 0.1312532766 - - dehydroascorbate reductase, putative [Ricinus communis]
20 Hb_000731_170 0.1314126334 - - PREDICTED: phospholipase A I [Jatropha curcas]

Gene co-expression network

sample Hb_010128_100 Hb_010128_100 Hb_000483_300 Hb_000483_300 Hb_010128_100--Hb_000483_300 Hb_001269_190 Hb_001269_190 Hb_010128_100--Hb_001269_190 Hb_023371_020 Hb_023371_020 Hb_010128_100--Hb_023371_020 Hb_001951_150 Hb_001951_150 Hb_010128_100--Hb_001951_150 Hb_001141_420 Hb_001141_420 Hb_010128_100--Hb_001141_420 Hb_001512_010 Hb_001512_010 Hb_010128_100--Hb_001512_010 Hb_000347_240 Hb_000347_240 Hb_000483_300--Hb_000347_240 Hb_001189_070 Hb_001189_070 Hb_000483_300--Hb_001189_070 Hb_004157_050 Hb_004157_050 Hb_000483_300--Hb_004157_050 Hb_001366_180 Hb_001366_180 Hb_000483_300--Hb_001366_180 Hb_000483_300--Hb_023371_020 Hb_000053_020 Hb_000053_020 Hb_000483_300--Hb_000053_020 Hb_185255_010 Hb_185255_010 Hb_001269_190--Hb_185255_010 Hb_002995_050 Hb_002995_050 Hb_001269_190--Hb_002995_050 Hb_001489_110 Hb_001489_110 Hb_001269_190--Hb_001489_110 Hb_000179_270 Hb_000179_270 Hb_001269_190--Hb_000179_270 Hb_006683_070 Hb_006683_070 Hb_001269_190--Hb_006683_070 Hb_000087_070 Hb_000087_070 Hb_001269_190--Hb_000087_070 Hb_003878_090 Hb_003878_090 Hb_023371_020--Hb_003878_090 Hb_023371_020--Hb_001141_420 Hb_004545_110 Hb_004545_110 Hb_023371_020--Hb_004545_110 Hb_023371_020--Hb_004157_050 Hb_133702_010 Hb_133702_010 Hb_023371_020--Hb_133702_010 Hb_000260_350 Hb_000260_350 Hb_023371_020--Hb_000260_350 Hb_011214_090 Hb_011214_090 Hb_001951_150--Hb_011214_090 Hb_000016_210 Hb_000016_210 Hb_001951_150--Hb_000016_210 Hb_001946_050 Hb_001946_050 Hb_001951_150--Hb_001946_050 Hb_005463_110 Hb_005463_110 Hb_001951_150--Hb_005463_110 Hb_001314_080 Hb_001314_080 Hb_001951_150--Hb_001314_080 Hb_001999_210 Hb_001999_210 Hb_001951_150--Hb_001999_210 Hb_000603_160 Hb_000603_160 Hb_001141_420--Hb_000603_160 Hb_005563_070 Hb_005563_070 Hb_001141_420--Hb_005563_070 Hb_003058_120 Hb_003058_120 Hb_001141_420--Hb_003058_120 Hb_000220_100 Hb_000220_100 Hb_001141_420--Hb_000220_100 Hb_168978_010 Hb_168978_010 Hb_001141_420--Hb_168978_010 Hb_001512_010--Hb_000483_300 Hb_008103_050 Hb_008103_050 Hb_001512_010--Hb_008103_050 Hb_001512_010--Hb_001366_180 Hb_006478_020 Hb_006478_020 Hb_001512_010--Hb_006478_020 Hb_001512_010--Hb_023371_020 Hb_000329_210 Hb_000329_210 Hb_001512_010--Hb_000329_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.32827 9.45789 6.90219 16.4899 4.89464 6.41687
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.4981 11.7169 6.68826 9.19212 16.4131

CAGE analysis