Hb_010142_030

Information

Type -
Description -
Location Contig10142: 19545-33359
Sequence    

Annotation

kegg
ID rcu:RCOM_1037500
description isoamylase, putative (EC:3.2.1.68)
nr
ID XP_012067924.1
description PREDICTED: isoamylase 3, chloroplastic isoform X2 [Jatropha curcas]
swissprot
ID Q9M0S5
description Isoamylase 3, chloroplastic OS=Arabidopsis thaliana GN=ISA3 PE=2 SV=2
trembl
ID A0A067LA91
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15832 PE=4 SV=1
Gene Ontology
ID GO:0009569
description isoamylase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00726: 18266-18618 , PASA_asmbl_00727: 19585-33311 , PASA_asmbl_00728: 24602-32876 , PASA_asmbl_00729: 19585-22471 , PASA_asmbl_00730: 19585-22440 , PASA_asmbl_00731: 24639-28948 , PASA_asmbl_00733: 26437-27076
cDNA
(Sanger)
(ID:Location)		 028_H03.ab1: 19769-22471

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010142_030 0.0 - - PREDICTED: isoamylase 3, chloroplastic isoform X2 [Jatropha curcas]
2 Hb_003693_070 0.0576541002 - - PREDICTED: S-(hydroxymethyl)glutathione dehydrogenase [Jatropha curcas]
3 Hb_000120_060 0.0660695091 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP20-1 [Populus euphratica]
4 Hb_000023_280 0.0684703565 - - hypothetical protein POPTR_0006s28210g [Populus trichocarpa]
5 Hb_000116_410 0.0723774604 - - hypothetical protein JCGZ_22416 [Jatropha curcas]
6 Hb_003940_040 0.0782599211 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001635_090 0.0797407443 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 7 isoform X1 [Populus euphratica]
8 Hb_001252_120 0.0809394102 - - PREDICTED: delta-1-pyrroline-5-carboxylate synthase-like [Gossypium raimondii]
9 Hb_000205_300 0.0833616771 - - PREDICTED: uncharacterized protein LOC105647767 [Jatropha curcas]
10 Hb_004032_150 0.0853569976 - - PREDICTED: chaperone protein dnaJ 10-like [Jatropha curcas]
11 Hb_011485_070 0.0859856611 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
12 Hb_002667_060 0.0868845224 - - mannose-1-phosphate guanyltransferase, putative [Ricinus communis]
13 Hb_073973_100 0.0871798142 - - PREDICTED: uncharacterized protein LOC105638910 [Jatropha curcas]
14 Hb_001492_020 0.0874683726 - - PREDICTED: diacylglycerol kinase 3-like [Jatropha curcas]
15 Hb_004767_100 0.0889925379 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
16 Hb_000120_670 0.0895665344 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
17 Hb_001575_090 0.0901402558 - - PREDICTED: putative glucose-6-phosphate 1-epimerase [Jatropha curcas]
18 Hb_001584_120 0.0910126749 - - PREDICTED: probable Xaa-Pro aminopeptidase 3 [Jatropha curcas]
19 Hb_003761_010 0.0911455834 - - alcohol dehydrogenase, putative [Ricinus communis]
20 Hb_155159_020 0.091171927 - - PREDICTED: clathrin light chain 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_010142_030 Hb_010142_030 Hb_003693_070 Hb_003693_070 Hb_010142_030--Hb_003693_070 Hb_000120_060 Hb_000120_060 Hb_010142_030--Hb_000120_060 Hb_000023_280 Hb_000023_280 Hb_010142_030--Hb_000023_280 Hb_000116_410 Hb_000116_410 Hb_010142_030--Hb_000116_410 Hb_003940_040 Hb_003940_040 Hb_010142_030--Hb_003940_040 Hb_001635_090 Hb_001635_090 Hb_010142_030--Hb_001635_090 Hb_003693_070--Hb_000120_060 Hb_000808_280 Hb_000808_280 Hb_003693_070--Hb_000808_280 Hb_004046_050 Hb_004046_050 Hb_003693_070--Hb_004046_050 Hb_000205_300 Hb_000205_300 Hb_003693_070--Hb_000205_300 Hb_000019_030 Hb_000019_030 Hb_003693_070--Hb_000019_030 Hb_000270_490 Hb_000270_490 Hb_000120_060--Hb_000270_490 Hb_000120_060--Hb_000808_280 Hb_001492_020 Hb_001492_020 Hb_000120_060--Hb_001492_020 Hb_002783_240 Hb_002783_240 Hb_000120_060--Hb_002783_240 Hb_003761_010 Hb_003761_010 Hb_000023_280--Hb_003761_010 Hb_004143_040 Hb_004143_040 Hb_000023_280--Hb_004143_040 Hb_000645_090 Hb_000645_090 Hb_000023_280--Hb_000645_090 Hb_001215_040 Hb_001215_040 Hb_000023_280--Hb_001215_040 Hb_000023_280--Hb_000116_410 Hb_000116_410--Hb_001635_090 Hb_000191_150 Hb_000191_150 Hb_000116_410--Hb_000191_150 Hb_000116_410--Hb_004143_040 Hb_001178_070 Hb_001178_070 Hb_000116_410--Hb_001178_070 Hb_028285_010 Hb_028285_010 Hb_000116_410--Hb_028285_010 Hb_099878_030 Hb_099878_030 Hb_003940_040--Hb_099878_030 Hb_000392_190 Hb_000392_190 Hb_003940_040--Hb_000392_190 Hb_004109_310 Hb_004109_310 Hb_003940_040--Hb_004109_310 Hb_003940_040--Hb_000023_280 Hb_000140_280 Hb_000140_280 Hb_003940_040--Hb_000140_280 Hb_001408_040 Hb_001408_040 Hb_001635_090--Hb_001408_040 Hb_001584_120 Hb_001584_120 Hb_001635_090--Hb_001584_120 Hb_007576_110 Hb_007576_110 Hb_001635_090--Hb_007576_110 Hb_000173_490 Hb_000173_490 Hb_001635_090--Hb_000173_490 Hb_000120_670 Hb_000120_670 Hb_001635_090--Hb_000120_670
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.86738 5.08911 3.50275 7.79754 5.72752 9.00001
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.48018 5.89566 7.59064 9.41881 2.59924

CAGE analysis