Hb_010142_070

Information

Type -
Description -
Location Contig10142: 48710-51783
Sequence    

Annotation

kegg
ID rcu:RCOM_1037550
description hypothetical protein
nr
ID XP_012067932.1
description PREDICTED: uncharacterized protein LOC105630659 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LBD6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15836 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00738: 48747-52004
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010142_070 0.0 - - PREDICTED: uncharacterized protein LOC105630659 [Jatropha curcas]
2 Hb_000062_340 0.0974602512 - - PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like [Jatropha curcas]
3 Hb_000975_300 0.1120409495 - - Rab2 [Hevea brasiliensis]
4 Hb_000735_130 0.1295201897 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003376_120 0.1331262324 - - PREDICTED: cell number regulator 8 [Jatropha curcas]
6 Hb_000162_040 0.1346416545 - - PREDICTED: pentatricopeptide repeat-containing protein At2g21090 [Jatropha curcas]
7 Hb_027402_070 0.1384946568 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
8 Hb_003408_030 0.1420279482 - - PREDICTED: protein YIF1B [Jatropha curcas]
9 Hb_000510_140 0.1427041437 - - PREDICTED: E3 ubiquitin protein ligase DRIP2 [Jatropha curcas]
10 Hb_000753_130 0.1458428941 - - PREDICTED: uncharacterized protein LOC105640673 [Jatropha curcas]
11 Hb_001439_190 0.1470348734 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
12 Hb_000431_010 0.1481104646 - - hypothetical protein POPTR_0016s05340g [Populus trichocarpa]
13 Hb_010589_040 0.1487995225 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001141_280 0.149841643 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14820 [Vitis vinifera]
15 Hb_001633_170 0.1508770919 - - PREDICTED: aspartokinase 2, chloroplastic-like isoform X1 [Jatropha curcas]
16 Hb_005463_020 0.1513520341 - - PREDICTED: RING-H2 finger protein ATL52-like [Jatropha curcas]
17 Hb_020301_040 0.1532784494 - - PREDICTED: mitochondrial substrate carrier family protein P [Jatropha curcas]
18 Hb_000976_360 0.1539278803 - - PREDICTED: uncharacterized protein LOC105646237 [Jatropha curcas]
19 Hb_008311_010 0.1541737713 - - hypothetical protein CARUB_v10003781mg [Capsella rubella]
20 Hb_031862_110 0.1563152628 - - calcium-dependent protein kinase [Hevea brasiliensis]

Gene co-expression network

sample Hb_010142_070 Hb_010142_070 Hb_000062_340 Hb_000062_340 Hb_010142_070--Hb_000062_340 Hb_000975_300 Hb_000975_300 Hb_010142_070--Hb_000975_300 Hb_000735_130 Hb_000735_130 Hb_010142_070--Hb_000735_130 Hb_003376_120 Hb_003376_120 Hb_010142_070--Hb_003376_120 Hb_000162_040 Hb_000162_040 Hb_010142_070--Hb_000162_040 Hb_027402_070 Hb_027402_070 Hb_010142_070--Hb_027402_070 Hb_000062_340--Hb_000975_300 Hb_007594_120 Hb_007594_120 Hb_000062_340--Hb_007594_120 Hb_003632_010 Hb_003632_010 Hb_000062_340--Hb_003632_010 Hb_000302_220 Hb_000302_220 Hb_000062_340--Hb_000302_220 Hb_000062_340--Hb_000735_130 Hb_000975_300--Hb_007594_120 Hb_020301_040 Hb_020301_040 Hb_000975_300--Hb_020301_040 Hb_000963_180 Hb_000963_180 Hb_000975_300--Hb_000963_180 Hb_002182_030 Hb_002182_030 Hb_000975_300--Hb_002182_030 Hb_002876_120 Hb_002876_120 Hb_000975_300--Hb_002876_120 Hb_012505_010 Hb_012505_010 Hb_000735_130--Hb_012505_010 Hb_001277_070 Hb_001277_070 Hb_000735_130--Hb_001277_070 Hb_044662_070 Hb_044662_070 Hb_000735_130--Hb_044662_070 Hb_000735_130--Hb_003376_120 Hb_004048_110 Hb_004048_110 Hb_000735_130--Hb_004048_110 Hb_000634_100 Hb_000634_100 Hb_003376_120--Hb_000634_100 Hb_003408_030 Hb_003408_030 Hb_003376_120--Hb_003408_030 Hb_023386_080 Hb_023386_080 Hb_003376_120--Hb_023386_080 Hb_003376_120--Hb_044662_070 Hb_007924_020 Hb_007924_020 Hb_003376_120--Hb_007924_020 Hb_000627_120 Hb_000627_120 Hb_003376_120--Hb_000627_120 Hb_000162_040--Hb_027402_070 Hb_004306_060 Hb_004306_060 Hb_000162_040--Hb_004306_060 Hb_023292_010 Hb_023292_010 Hb_000162_040--Hb_023292_010 Hb_004128_180 Hb_004128_180 Hb_000162_040--Hb_004128_180 Hb_064997_010 Hb_064997_010 Hb_000162_040--Hb_064997_010 Hb_001633_170 Hb_001633_170 Hb_000162_040--Hb_001633_170 Hb_000753_130 Hb_000753_130 Hb_027402_070--Hb_000753_130 Hb_000377_060 Hb_000377_060 Hb_027402_070--Hb_000377_060 Hb_001141_280 Hb_001141_280 Hb_027402_070--Hb_001141_280 Hb_000976_360 Hb_000976_360 Hb_027402_070--Hb_000976_360 Hb_029866_040 Hb_029866_040 Hb_027402_070--Hb_029866_040 Hb_027402_070--Hb_000975_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.72262 0.239852 5.829 2.63057 5.00544 9.86888
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.4484 12.7658 24.9928 2.60715 2.81327

CAGE analysis