Hb_010142_080

Information

Type -
Description -
Location Contig10142: 55777-57662
Sequence    

Annotation

kegg
ID pmum:103319581
description uncharacterized LOC103319581
nr
ID XP_012067933.1
description PREDICTED: uncharacterized protein LOC105630660 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LA97
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15837 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00739: 55761-57592
cDNA
(Sanger)
(ID:Location)		 014_H13.ab1: 55988-57592

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010142_080 0.0 - - PREDICTED: uncharacterized protein LOC105630660 [Jatropha curcas]
2 Hb_005532_010 0.1774384204 - - -
3 Hb_009421_010 0.1802401648 - - -
4 Hb_021616_010 0.180693429 - - -
5 Hb_003226_290 0.2159464396 - - catalytic, putative [Ricinus communis]
6 Hb_004413_030 0.2234720069 - - Retrotransposon protein, putative [Theobroma cacao]
7 Hb_013429_020 0.2237769299 - - prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis]
8 Hb_062244_010 0.230266096 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_008370_010 0.2366988707 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_005285_010 0.2430275421 - - PREDICTED: ent-kaurenoic acid oxidase 1-like isoform X1 [Jatropha curcas]
11 Hb_020580_010 0.253473749 - - -
12 Hb_004157_110 0.2588296715 - - -
13 Hb_162126_010 0.2617370711 - - -
14 Hb_000430_010 0.2624754677 - - -
15 Hb_125847_010 0.2641037866 - - -
16 Hb_002513_030 0.2645419808 - - PREDICTED: alpha-L-fucosidase 2-like isoform X2 [Elaeis guineensis]
17 Hb_005483_010 0.2664934328 - - PREDICTED: replication protein A 70 kDa DNA-binding subunit A [Jatropha curcas]
18 Hb_006806_010 0.267163184 - - -
19 Hb_008246_050 0.2684861691 - - -
20 Hb_005799_040 0.268496079 - - PREDICTED: bidirectional sugar transporter SWEET4-like isoform X1 [Gossypium raimondii]

Gene co-expression network

sample Hb_010142_080 Hb_010142_080 Hb_005532_010 Hb_005532_010 Hb_010142_080--Hb_005532_010 Hb_009421_010 Hb_009421_010 Hb_010142_080--Hb_009421_010 Hb_021616_010 Hb_021616_010 Hb_010142_080--Hb_021616_010 Hb_003226_290 Hb_003226_290 Hb_010142_080--Hb_003226_290 Hb_004413_030 Hb_004413_030 Hb_010142_080--Hb_004413_030 Hb_013429_020 Hb_013429_020 Hb_010142_080--Hb_013429_020 Hb_062244_010 Hb_062244_010 Hb_005532_010--Hb_062244_010 Hb_005532_010--Hb_021616_010 Hb_005532_010--Hb_009421_010 Hb_005532_010--Hb_004413_030 Hb_005483_010 Hb_005483_010 Hb_005532_010--Hb_005483_010 Hb_008370_010 Hb_008370_010 Hb_009421_010--Hb_008370_010 Hb_025457_010 Hb_025457_010 Hb_009421_010--Hb_025457_010 Hb_009421_010--Hb_013429_020 Hb_020580_010 Hb_020580_010 Hb_009421_010--Hb_020580_010 Hb_021616_010--Hb_005483_010 Hb_174876_010 Hb_174876_010 Hb_021616_010--Hb_174876_010 Hb_021616_010--Hb_013429_020 Hb_021616_010--Hb_008370_010 Hb_000574_550 Hb_000574_550 Hb_003226_290--Hb_000574_550 Hb_187513_010 Hb_187513_010 Hb_003226_290--Hb_187513_010 Hb_005285_010 Hb_005285_010 Hb_003226_290--Hb_005285_010 Hb_162126_010 Hb_162126_010 Hb_003226_290--Hb_162126_010 Hb_000430_010 Hb_000430_010 Hb_003226_290--Hb_000430_010 Hb_125847_010 Hb_125847_010 Hb_003226_290--Hb_125847_010 Hb_135624_010 Hb_135624_010 Hb_004413_030--Hb_135624_010 Hb_004413_030--Hb_062244_010 Hb_001009_130 Hb_001009_130 Hb_004413_030--Hb_001009_130 Hb_003446_040 Hb_003446_040 Hb_004413_030--Hb_003446_040 Hb_001277_310 Hb_001277_310 Hb_004413_030--Hb_001277_310 Hb_013429_020--Hb_020580_010 Hb_003321_020 Hb_003321_020 Hb_013429_020--Hb_003321_020 Hb_003117_040 Hb_003117_040 Hb_013429_020--Hb_003117_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.2806 0.141057 0 0.0321918 0.100864 4.02314
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0472621 0.0371734 26.7803 13.5112 0.381721

CAGE analysis