Hb_010172_050

Information

Type -
Description -
Location Contig10172: 52775-54634
Sequence    

Annotation

kegg
ID vvi:100854051
description pentatricopeptide repeat-containing protein At4g21065
nr
ID XP_012072492.1
description PREDICTED: pentatricopeptide repeat-containing protein At4g21065 [Jatropha curcas]
swissprot
ID A8MQA3
description Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
trembl
ID A0A067KPF7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04670 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein at4g21065

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00810: 52784-53250
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010172_050 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065 [Jatropha curcas]
2 Hb_016901_010 0.0764308193 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
3 Hb_000022_250 0.0772235769 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g15130 [Jatropha curcas]
4 Hb_002518_140 0.0779295867 - - hypothetical protein JCGZ_18870 [Jatropha curcas]
5 Hb_003266_130 0.0785222432 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
6 Hb_178968_110 0.078790253 - - PREDICTED: uncharacterized protein LOC105630268 [Jatropha curcas]
7 Hb_000063_140 0.0803687252 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Jatropha curcas]
8 Hb_000934_270 0.0805374413 - - PREDICTED: pentatricopeptide repeat-containing protein At3g21470 [Populus euphratica]
9 Hb_008695_210 0.081321717 - - PREDICTED: serine hydroxymethyltransferase 7 [Jatropha curcas]
10 Hb_001159_100 0.08595132 - - PREDICTED: pentatricopeptide repeat-containing protein At4g22760 [Jatropha curcas]
11 Hb_004586_340 0.0886801865 - - PREDICTED: serine/threonine-protein kinase PEPKR2 [Jatropha curcas]
12 Hb_007951_050 0.0911535499 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_005348_140 0.0916580219 - - PREDICTED: ubiquinone biosynthesis protein COQ9-B, mitochondrial [Jatropha curcas]
14 Hb_005532_060 0.0923891846 - - PREDICTED: pentatricopeptide repeat-containing protein At2g20540-like [Jatropha curcas]
15 Hb_085863_030 0.0930553346 - - PREDICTED: pentatricopeptide repeat-containing protein At1g31430 [Jatropha curcas]
16 Hb_002105_040 0.094683492 - - -
17 Hb_011571_010 0.095107388 - - Metal tolerance protein C4, putative [Ricinus communis]
18 Hb_007317_210 0.0957952178 - - PREDICTED: probable calcium-binding protein CML48 [Jatropha curcas]
19 Hb_002496_030 0.0958700155 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial [Jatropha curcas]
20 Hb_013405_030 0.0973092587 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_010172_050 Hb_010172_050 Hb_016901_010 Hb_016901_010 Hb_010172_050--Hb_016901_010 Hb_000022_250 Hb_000022_250 Hb_010172_050--Hb_000022_250 Hb_002518_140 Hb_002518_140 Hb_010172_050--Hb_002518_140 Hb_003266_130 Hb_003266_130 Hb_010172_050--Hb_003266_130 Hb_178968_110 Hb_178968_110 Hb_010172_050--Hb_178968_110 Hb_000063_140 Hb_000063_140 Hb_010172_050--Hb_000063_140 Hb_001454_190 Hb_001454_190 Hb_016901_010--Hb_001454_190 Hb_000696_040 Hb_000696_040 Hb_016901_010--Hb_000696_040 Hb_085863_030 Hb_085863_030 Hb_016901_010--Hb_085863_030 Hb_000723_080 Hb_000723_080 Hb_016901_010--Hb_000723_080 Hb_000343_130 Hb_000343_130 Hb_016901_010--Hb_000343_130 Hb_002810_020 Hb_002810_020 Hb_000022_250--Hb_002810_020 Hb_007951_050 Hb_007951_050 Hb_000022_250--Hb_007951_050 Hb_000554_020 Hb_000554_020 Hb_000022_250--Hb_000554_020 Hb_001159_100 Hb_001159_100 Hb_000022_250--Hb_001159_100 Hb_001488_330 Hb_001488_330 Hb_000022_250--Hb_001488_330 Hb_001277_330 Hb_001277_330 Hb_002518_140--Hb_001277_330 Hb_010795_010 Hb_010795_010 Hb_002518_140--Hb_010795_010 Hb_013405_030 Hb_013405_030 Hb_002518_140--Hb_013405_030 Hb_171900_080 Hb_171900_080 Hb_002518_140--Hb_171900_080 Hb_126643_020 Hb_126643_020 Hb_002518_140--Hb_126643_020 Hb_003266_130--Hb_178968_110 Hb_000614_230 Hb_000614_230 Hb_003266_130--Hb_000614_230 Hb_006816_140 Hb_006816_140 Hb_003266_130--Hb_006816_140 Hb_005488_010 Hb_005488_010 Hb_003266_130--Hb_005488_010 Hb_001158_140 Hb_001158_140 Hb_003266_130--Hb_001158_140 Hb_005532_060 Hb_005532_060 Hb_178968_110--Hb_005532_060 Hb_000457_150 Hb_000457_150 Hb_178968_110--Hb_000457_150 Hb_000179_210 Hb_000179_210 Hb_178968_110--Hb_000179_210 Hb_178968_110--Hb_000614_230 Hb_000175_460 Hb_000175_460 Hb_000063_140--Hb_000175_460 Hb_000063_140--Hb_085863_030 Hb_003862_050 Hb_003862_050 Hb_000063_140--Hb_003862_050 Hb_005348_140 Hb_005348_140 Hb_000063_140--Hb_005348_140 Hb_001617_050 Hb_001617_050 Hb_000063_140--Hb_001617_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.03255 1.99976 1.35578 1.11463 2.13343 3.38372
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.74046 4.19691 5.79286 1.67859 1.94858

CAGE analysis