Hb_010172_070

Information

Type -
Description -
Location Contig10172: 61933-65943
Sequence    

Annotation

kegg
ID rcu:RCOM_1288580
description ELL-associated factor, putative
nr
ID XP_012072189.1
description PREDICTED: ELL-associated factor 1 [Jatropha curcas]
swissprot
ID B4LMA2
description Ell-associated factor Eaf OS=Drosophila virilis GN=Eaf PE=3 SV=1
trembl
ID A0A067L0K4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04673 PE=4 SV=1
Gene Ontology
ID GO:0032783
description ell-associated factor eaf

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00814: 61952-65854 , PASA_asmbl_00815: 61996-65930
cDNA
(Sanger)
(ID:Location)		 003_A15.ab1: 62421-65398 , 010_J10.ab1: 61955-62709 , 011_D01.ab1: 61929-65104 , 018_K17.ab1: 61952-65046 , 019_I10.ab1: 61929-65049 , 030_M08.ab1: 61952-65170 , 034_G03.ab1: 61929-65082 , 036_N24.ab1: 61952-65078 , 038_J11.ab1: 61952-65108 , 046_O20.ab1: 61929-63890

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010172_070 0.0 - - PREDICTED: ELL-associated factor 1 [Jatropha curcas]
2 Hb_007479_020 0.0729921011 - - PREDICTED: CMP-sialic acid transporter 5 [Jatropha curcas]
3 Hb_001912_010 0.0734796937 - - PREDICTED: uncharacterized protein LOC105636600 [Jatropha curcas]
4 Hb_001722_100 0.0751402963 - - conserved hypothetical protein [Ricinus communis]
5 Hb_014720_080 0.0761162282 - - iron-sulfur cluster scaffold protein [Hevea brasiliensis]
6 Hb_000922_270 0.0769515901 - - iron-sulfur cluster scaffold protein [Hevea brasiliensis]
7 Hb_001257_080 0.0772683434 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002540_030 0.0775037385 - - hypothetical protein 32 [Hevea brasiliensis]
9 Hb_000134_330 0.0799288531 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
10 Hb_000146_020 0.081247595 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
11 Hb_003376_130 0.0852152364 transcription factor TF Family: S1Fa-like DNA-binding protein S1FA, putative [Ricinus communis]
12 Hb_008173_090 0.0852184988 - - glutathione peroxidase, putative [Ricinus communis]
13 Hb_002918_200 0.0893047329 - - -
14 Hb_000099_060 0.0894550595 - - hypothetical protein JCGZ_23948 [Jatropha curcas]
15 Hb_000834_270 0.0897638933 - - PREDICTED: uncharacterized protein LOC105647032 isoform X2 [Jatropha curcas]
16 Hb_003376_030 0.0919308161 - - PREDICTED: ribonuclease P protein subunit p29 isoform X2 [Jatropha curcas]
17 Hb_004586_320 0.0920762781 - - PREDICTED: bet1-like protein At4g14600 [Jatropha curcas]
18 Hb_000120_750 0.0924481681 desease resistance Gene Name: NTPase_1 ATP binding protein, putative [Ricinus communis]
19 Hb_089140_100 0.0948184685 - - PREDICTED: F-box/LRR-repeat protein 4 [Jatropha curcas]
20 Hb_054127_040 0.0955161848 - - PREDICTED: 2-hydroxyacyl-CoA lyase [Jatropha curcas]

Gene co-expression network

sample Hb_010172_070 Hb_010172_070 Hb_007479_020 Hb_007479_020 Hb_010172_070--Hb_007479_020 Hb_001912_010 Hb_001912_010 Hb_010172_070--Hb_001912_010 Hb_001722_100 Hb_001722_100 Hb_010172_070--Hb_001722_100 Hb_014720_080 Hb_014720_080 Hb_010172_070--Hb_014720_080 Hb_000922_270 Hb_000922_270 Hb_010172_070--Hb_000922_270 Hb_001257_080 Hb_001257_080 Hb_010172_070--Hb_001257_080 Hb_007479_020--Hb_001722_100 Hb_000671_090 Hb_000671_090 Hb_007479_020--Hb_000671_090 Hb_001383_060 Hb_001383_060 Hb_007479_020--Hb_001383_060 Hb_001433_050 Hb_001433_050 Hb_007479_020--Hb_001433_050 Hb_000120_750 Hb_000120_750 Hb_007479_020--Hb_000120_750 Hb_008173_090 Hb_008173_090 Hb_007479_020--Hb_008173_090 Hb_000212_260 Hb_000212_260 Hb_001912_010--Hb_000212_260 Hb_001912_010--Hb_007479_020 Hb_006573_220 Hb_006573_220 Hb_001912_010--Hb_006573_220 Hb_000329_330 Hb_000329_330 Hb_001912_010--Hb_000329_330 Hb_003376_030 Hb_003376_030 Hb_001912_010--Hb_003376_030 Hb_001722_100--Hb_014720_080 Hb_001235_190 Hb_001235_190 Hb_001722_100--Hb_001235_190 Hb_002963_010 Hb_002963_010 Hb_001722_100--Hb_002963_010 Hb_000834_270 Hb_000834_270 Hb_001722_100--Hb_000834_270 Hb_001722_100--Hb_008173_090 Hb_000025_120 Hb_000025_120 Hb_014720_080--Hb_000025_120 Hb_021650_030 Hb_021650_030 Hb_014720_080--Hb_021650_030 Hb_002540_030 Hb_002540_030 Hb_014720_080--Hb_002540_030 Hb_000146_020 Hb_000146_020 Hb_014720_080--Hb_000146_020 Hb_014720_080--Hb_000834_270 Hb_003408_020 Hb_003408_020 Hb_000922_270--Hb_003408_020 Hb_007666_020 Hb_007666_020 Hb_000922_270--Hb_007666_020 Hb_001711_030 Hb_001711_030 Hb_000922_270--Hb_001711_030 Hb_000051_040 Hb_000051_040 Hb_000922_270--Hb_000051_040 Hb_000922_270--Hb_014720_080 Hb_002205_080 Hb_002205_080 Hb_001257_080--Hb_002205_080 Hb_007741_050 Hb_007741_050 Hb_001257_080--Hb_007741_050 Hb_007101_150 Hb_007101_150 Hb_001257_080--Hb_007101_150 Hb_002529_100 Hb_002529_100 Hb_001257_080--Hb_002529_100 Hb_022250_040 Hb_022250_040 Hb_001257_080--Hb_022250_040 Hb_000798_030 Hb_000798_030 Hb_001257_080--Hb_000798_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
88.8261 28.1246 23.4123 30.4434 69.5504 49.8329
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
163.243 169.908 114.428 50.3489 14.0479

CAGE analysis