Hb_010172_100

Information

Type -
Description -
Location Contig10172: 86815-88524
Sequence    

Annotation

kegg
ID pop:POPTR_0010s12480g
description POPTRDRAFT_833595; heavy-metal-associated domain-containing family protein
nr
ID XP_011038679.1
description PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Populus euphratica]
swissprot
ID Q9SZN7
description Heavy metal-associated isoprenylated plant protein 26 OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1
trembl
ID B9HW84
description Heavy-metal-associated domain-containing family protein OS=Populus trichocarpa GN=POPTR_0010s12480g PE=4 SV=1
Gene Ontology
ID GO:0046872
description heavy metal-associated isoprenylated plant protein 26-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00821: 86798-88557 , PASA_asmbl_00822: 86902-87604
cDNA
(Sanger)
(ID:Location)		 017_I04.ab1: 86875-88346 , 025_D10.ab1: 86798-88552 , 028_E03.ab1: 86881-88373 , 030_P06.ab1: 86879-88550 , 033_E10.ab1: 86882-88469 , 045_H14.ab1: 86880-88555 , 052_J05.ab1: 86881-88534 , 052_K23.ab1: 86881-88521

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010172_100 0.0 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Populus euphratica]
2 Hb_005908_040 0.0991296418 - - hypothetical protein POPTR_0017s06850g [Populus trichocarpa]
3 Hb_006351_110 0.1080985756 - - -
4 Hb_005137_020 0.1252291139 - - PREDICTED: uncharacterized protein LOC101759641 [Setaria italica]
5 Hb_000316_100 0.126608985 - - protein with unknown function [Ricinus communis]
6 Hb_001007_050 0.1281565749 - - hypothetical protein MIMGU_mgv1a0196712mg, partial [Erythranthe guttata]
7 Hb_001922_080 0.1415685512 - - Tellurite resistance protein tehA, putative [Ricinus communis]
8 Hb_008705_090 0.1427874442 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-2-like [Jatropha curcas]
9 Hb_000544_110 0.14456081 - - PREDICTED: probable calcium-binding protein CML27 [Jatropha curcas]
10 Hb_001842_080 0.1484436482 - - -
11 Hb_001102_250 0.1503598067 - - PREDICTED: E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X1 [Jatropha curcas]
12 Hb_003095_070 0.1514756542 - - hypothetical protein POPTR_0009s11230g [Populus trichocarpa]
13 Hb_000714_010 0.1548050792 - - PREDICTED: salt stress-induced hydrophobic peptide ESI3 [Vitis vinifera]
14 Hb_004159_050 0.1578679023 - - conserved hypothetical protein [Ricinus communis]
15 Hb_103752_010 0.1613415571 - - PREDICTED: uncharacterized protein At5g39865-like [Jatropha curcas]
16 Hb_003211_050 0.1620280972 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
17 Hb_072912_020 0.1624573264 - - abhydrolase domain containing, putative [Ricinus communis]
18 Hb_004297_040 0.1633275105 - - acyl CoA reductase [Hevea brasiliensis]
19 Hb_000329_660 0.1664435042 - - PREDICTED: carotenoid cleavage dioxygenase 7, chloroplastic [Jatropha curcas]
20 Hb_004635_060 0.1675091763 - - hypothetical protein POPTR_0006s22850g [Populus trichocarpa]

Gene co-expression network

sample Hb_010172_100 Hb_010172_100 Hb_005908_040 Hb_005908_040 Hb_010172_100--Hb_005908_040 Hb_006351_110 Hb_006351_110 Hb_010172_100--Hb_006351_110 Hb_005137_020 Hb_005137_020 Hb_010172_100--Hb_005137_020 Hb_000316_100 Hb_000316_100 Hb_010172_100--Hb_000316_100 Hb_001007_050 Hb_001007_050 Hb_010172_100--Hb_001007_050 Hb_001922_080 Hb_001922_080 Hb_010172_100--Hb_001922_080 Hb_005908_040--Hb_005137_020 Hb_001102_250 Hb_001102_250 Hb_005908_040--Hb_001102_250 Hb_004297_040 Hb_004297_040 Hb_005908_040--Hb_004297_040 Hb_003095_070 Hb_003095_070 Hb_005908_040--Hb_003095_070 Hb_000544_110 Hb_000544_110 Hb_005908_040--Hb_000544_110 Hb_004159_050 Hb_004159_050 Hb_006351_110--Hb_004159_050 Hb_006351_110--Hb_001102_250 Hb_000103_550 Hb_000103_550 Hb_006351_110--Hb_000103_550 Hb_006351_110--Hb_000316_100 Hb_010594_030 Hb_010594_030 Hb_006351_110--Hb_010594_030 Hb_005137_020--Hb_000544_110 Hb_072912_020 Hb_072912_020 Hb_005137_020--Hb_072912_020 Hb_078633_010 Hb_078633_010 Hb_005137_020--Hb_078633_010 Hb_005137_020--Hb_001102_250 Hb_005137_020--Hb_004297_040 Hb_000175_130 Hb_000175_130 Hb_000316_100--Hb_000175_130 Hb_001842_080 Hb_001842_080 Hb_000316_100--Hb_001842_080 Hb_000316_100--Hb_005908_040 Hb_027892_040 Hb_027892_040 Hb_000316_100--Hb_027892_040 Hb_008705_090 Hb_008705_090 Hb_001007_050--Hb_008705_090 Hb_003777_230 Hb_003777_230 Hb_001007_050--Hb_003777_230 Hb_004474_010 Hb_004474_010 Hb_001007_050--Hb_004474_010 Hb_001101_010 Hb_001101_010 Hb_001007_050--Hb_001101_010 Hb_002260_020 Hb_002260_020 Hb_001007_050--Hb_002260_020 Hb_001922_080--Hb_001842_080 Hb_000398_030 Hb_000398_030 Hb_001922_080--Hb_000398_030 Hb_000270_730 Hb_000270_730 Hb_001922_080--Hb_000270_730 Hb_001922_080--Hb_000316_100 Hb_001922_080--Hb_000544_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
700.516 17.0775 5.15193 46.5599 219.214 638.161
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2471.16 4590.14 1258.73 100.423 11.9276

CAGE analysis