Hb_010174_010

Information

Type -
Description -
Location Contig10174: 22053-24798
Sequence    

Annotation

kegg
ID tcc:TCM_010656
description Terminal EAR1-like 1, putative isoform 1
nr
ID XP_012085547.1
description PREDICTED: protein terminal ear1 [Jatropha curcas]
swissprot
ID O65001
description Protein terminal ear1 OS=Zea mays GN=TE1 PE=2 SV=1
trembl
ID A0A067K3B1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17868 PE=4 SV=1
Gene Ontology
ID GO:0000166
description protein terminal ear1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00830: 22535-23153 , PASA_asmbl_00831: 24435-24657
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010174_010 0.0 - - PREDICTED: protein terminal ear1 [Jatropha curcas]
2 Hb_000120_360 0.1629166889 - - conserved hypothetical protein [Ricinus communis]
3 Hb_028285_030 0.2052387193 - - PREDICTED: protein GLUTAMINE DUMPER 1-like [Elaeis guineensis]
4 Hb_000235_010 0.2056345379 - - PREDICTED: serine carboxypeptidase-like 18 [Jatropha curcas]
5 Hb_128524_010 0.2162176346 - - PREDICTED: polyadenylate-binding protein 7 isoform X1 [Jatropha curcas]
6 Hb_002918_040 0.2203726538 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
7 Hb_000792_120 0.2296809869 - - PREDICTED: mitochondrial uncoupling protein 1 isoform X2 [Jatropha curcas]
8 Hb_012799_020 0.2307881794 - - metal ion binding protein, putative [Ricinus communis]
9 Hb_002245_040 0.2327723035 - - thioredoxin h [Hevea brasiliensis]
10 Hb_000453_300 0.2388090448 - - latex cystatin [Hevea brasiliensis]
11 Hb_001579_140 0.2394615848 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO2 isoform X2 [Jatropha curcas]
12 Hb_107504_010 0.2510620186 - - -
13 Hb_000175_610 0.2513005743 transcription factor TF Family: Tify PREDICTED: protein TIFY 8 isoform X3 [Jatropha curcas]
14 Hb_001047_130 0.2514635694 - - hypothetical protein PHAVU_001G152800g [Phaseolus vulgaris]
15 Hb_003286_020 0.2575688723 - - hypothetical protein POPTR_0007s05070g [Populus trichocarpa]
16 Hb_000749_240 0.260730255 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004800_020 0.2611901667 - - PREDICTED: TPR repeat-containing thioredoxin TTL4-like [Jatropha curcas]
18 Hb_001936_140 0.2637875904 - - PREDICTED: ATP-citrate synthase alpha chain protein 1 [Jatropha curcas]
19 Hb_000001_120 0.2646994416 - - hypothetical protein JCGZ_03063 [Jatropha curcas]
20 Hb_000483_480 0.2679437551 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_010174_010 Hb_010174_010 Hb_000120_360 Hb_000120_360 Hb_010174_010--Hb_000120_360 Hb_028285_030 Hb_028285_030 Hb_010174_010--Hb_028285_030 Hb_000235_010 Hb_000235_010 Hb_010174_010--Hb_000235_010 Hb_128524_010 Hb_128524_010 Hb_010174_010--Hb_128524_010 Hb_002918_040 Hb_002918_040 Hb_010174_010--Hb_002918_040 Hb_000792_120 Hb_000792_120 Hb_010174_010--Hb_000792_120 Hb_001047_130 Hb_001047_130 Hb_000120_360--Hb_001047_130 Hb_000120_360--Hb_028285_030 Hb_000175_610 Hb_000175_610 Hb_000120_360--Hb_000175_610 Hb_002245_040 Hb_002245_040 Hb_000120_360--Hb_002245_040 Hb_001780_070 Hb_001780_070 Hb_000120_360--Hb_001780_070 Hb_028285_030--Hb_128524_010 Hb_028285_030--Hb_002245_040 Hb_000453_300 Hb_000453_300 Hb_028285_030--Hb_000453_300 Hb_000387_060 Hb_000387_060 Hb_028285_030--Hb_000387_060 Hb_003050_070 Hb_003050_070 Hb_028285_030--Hb_003050_070 Hb_000235_010--Hb_003050_070 Hb_000803_050 Hb_000803_050 Hb_000235_010--Hb_000803_050 Hb_001507_070 Hb_001507_070 Hb_000235_010--Hb_001507_070 Hb_000235_010--Hb_000453_300 Hb_003211_050 Hb_003211_050 Hb_000235_010--Hb_003211_050 Hb_000235_010--Hb_000175_610 Hb_128524_010--Hb_002245_040 Hb_128524_010--Hb_000792_120 Hb_135585_010 Hb_135585_010 Hb_128524_010--Hb_135585_010 Hb_053373_010 Hb_053373_010 Hb_128524_010--Hb_053373_010 Hb_128524_010--Hb_000453_300 Hb_107504_010 Hb_107504_010 Hb_002918_040--Hb_107504_010 Hb_012799_020 Hb_012799_020 Hb_002918_040--Hb_012799_020 Hb_002918_040--Hb_000453_300 Hb_001936_140 Hb_001936_140 Hb_002918_040--Hb_001936_140 Hb_004650_100 Hb_004650_100 Hb_002918_040--Hb_004650_100 Hb_012022_100 Hb_012022_100 Hb_000792_120--Hb_012022_100 Hb_001579_140 Hb_001579_140 Hb_000792_120--Hb_001579_140 Hb_000300_210 Hb_000300_210 Hb_000792_120--Hb_000300_210 Hb_000329_660 Hb_000329_660 Hb_000792_120--Hb_000329_660 Hb_000792_120--Hb_000387_060 Hb_008066_030 Hb_008066_030 Hb_000792_120--Hb_008066_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0214156 0.0741881 0.072459 0.0214451 0.0179013 0.00916004
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.825545 0.290598 0.19467 0.0543884 0

CAGE analysis