Hb_010174_020

Information

Type -
Description -
Location Contig10174: 40103-48890
Sequence    

Annotation

kegg
ID rcu:RCOM_1083060
description protein binding protein, putative
nr
ID XP_002515041.1
description protein binding protein, putative [Ricinus communis]
swissprot
ID Q9SAF1
description Actin-related protein 3 OS=Arabidopsis thaliana GN=ARP3 PE=1 SV=1
trembl
ID B9RMS2
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_1083060 PE=3 SV=1
Gene Ontology
ID GO:0005829
description actin-related protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00832: 42422-48762
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010174_020 0.0 - - protein binding protein, putative [Ricinus communis]
2 Hb_001205_150 0.0583518614 - - Uncharacterized protein TCM_000403 [Theobroma cacao]
3 Hb_000692_220 0.0732864611 - - hypothetical protein B456_002G120900 [Gossypium raimondii]
4 Hb_000479_190 0.0745768179 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003671_020 0.0785417184 - - calcineurin B, putative [Ricinus communis]
6 Hb_008300_010 0.0805624082 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG13 homolog [Jatropha curcas]
7 Hb_001461_010 0.0864262131 - - PREDICTED: trafficking protein particle complex subunit 5 [Pyrus x bretschneideri]
8 Hb_000985_060 0.0865906932 - - PREDICTED: protein transport protein SFT2-like isoform X1 [Jatropha curcas]
9 Hb_001234_100 0.0887217699 - - PREDICTED: eyes absent homolog 2 isoform X1 [Jatropha curcas]
10 Hb_001842_040 0.0889683886 - - PREDICTED: uncharacterized protein LOC100800807 isoform X2 [Glycine max]
11 Hb_000161_060 0.0890335732 - - PREDICTED: probable magnesium transporter NIPA4 [Jatropha curcas]
12 Hb_029866_070 0.0891482283 - - PREDICTED: myosin IB heavy chain [Jatropha curcas]
13 Hb_012799_160 0.0917633849 - - PREDICTED: ADP-ribosylation factor-related protein 1-like [Jatropha curcas]
14 Hb_005289_030 0.0918143102 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Jatropha curcas]
15 Hb_006117_070 0.0933564786 - - PREDICTED: uncharacterized protein LOC105639569 isoform X2 [Jatropha curcas]
16 Hb_004705_100 0.0940944935 - - PREDICTED: inactive leucine-rich repeat receptor-like protein kinase CORYNE [Jatropha curcas]
17 Hb_002375_070 0.0944834072 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004374_140 0.094571507 - - hypothetical protein POPTR_0003s13070g [Populus trichocarpa]
19 Hb_029388_030 0.0947324304 - - PREDICTED: uncharacterized protein LOC105647324 [Jatropha curcas]
20 Hb_001584_190 0.0960491206 - - clathrin coat adaptor ap3 medium chain, putative [Ricinus communis]

Gene co-expression network

sample Hb_010174_020 Hb_010174_020 Hb_001205_150 Hb_001205_150 Hb_010174_020--Hb_001205_150 Hb_000692_220 Hb_000692_220 Hb_010174_020--Hb_000692_220 Hb_000479_190 Hb_000479_190 Hb_010174_020--Hb_000479_190 Hb_003671_020 Hb_003671_020 Hb_010174_020--Hb_003671_020 Hb_008300_010 Hb_008300_010 Hb_010174_020--Hb_008300_010 Hb_001461_010 Hb_001461_010 Hb_010174_020--Hb_001461_010 Hb_001205_150--Hb_000692_220 Hb_001205_150--Hb_000479_190 Hb_006429_010 Hb_006429_010 Hb_001205_150--Hb_006429_010 Hb_003502_090 Hb_003502_090 Hb_001205_150--Hb_003502_090 Hb_000161_060 Hb_000161_060 Hb_001205_150--Hb_000161_060 Hb_000692_220--Hb_000479_190 Hb_092337_010 Hb_092337_010 Hb_000692_220--Hb_092337_010 Hb_002375_070 Hb_002375_070 Hb_000692_220--Hb_002375_070 Hb_003125_010 Hb_003125_010 Hb_000692_220--Hb_003125_010 Hb_001584_190 Hb_001584_190 Hb_000479_190--Hb_001584_190 Hb_000985_060 Hb_000985_060 Hb_000479_190--Hb_000985_060 Hb_000479_190--Hb_003502_090 Hb_003108_020 Hb_003108_020 Hb_000479_190--Hb_003108_020 Hb_000363_360 Hb_000363_360 Hb_000479_190--Hb_000363_360 Hb_000125_100 Hb_000125_100 Hb_003671_020--Hb_000125_100 Hb_003414_050 Hb_003414_050 Hb_003671_020--Hb_003414_050 Hb_029388_030 Hb_029388_030 Hb_003671_020--Hb_029388_030 Hb_003671_020--Hb_002375_070 Hb_009615_070 Hb_009615_070 Hb_003671_020--Hb_009615_070 Hb_003671_020--Hb_000479_190 Hb_001140_060 Hb_001140_060 Hb_008300_010--Hb_001140_060 Hb_009486_130 Hb_009486_130 Hb_008300_010--Hb_009486_130 Hb_000431_010 Hb_000431_010 Hb_008300_010--Hb_000431_010 Hb_006117_070 Hb_006117_070 Hb_008300_010--Hb_006117_070 Hb_000479_010 Hb_000479_010 Hb_008300_010--Hb_000479_010 Hb_004374_140 Hb_004374_140 Hb_001461_010--Hb_004374_140 Hb_008544_010 Hb_008544_010 Hb_001461_010--Hb_008544_010 Hb_001842_040 Hb_001842_040 Hb_001461_010--Hb_001842_040 Hb_010042_010 Hb_010042_010 Hb_001461_010--Hb_010042_010 Hb_002631_020 Hb_002631_020 Hb_001461_010--Hb_002631_020 Hb_001461_010--Hb_000985_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.5189 5.86752 5.16205 19.6006 15.1327 18.9712
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.1544 31.946 30.0416 8.6579 9.86478

CAGE analysis