Hb_010174_070

Information

Type -
Description -
Location Contig10174: 73488-73738
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00838: 72909-74067 , PASA_asmbl_00839: 69997-74100
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010174_070 0.0 - - -
2 Hb_179520_010 0.1099460758 - - PREDICTED: uncharacterized protein LOC105763691 [Gossypium raimondii]
3 Hb_108528_010 0.1315457185 - - unnamed protein product [Coffea canephora]
4 Hb_001902_120 0.1529557211 - - PREDICTED: uncharacterized protein LOC105648455 isoform X2 [Jatropha curcas]
5 Hb_064885_080 0.16379429 - - -
6 Hb_001114_340 0.1710415976 - - hypothetical protein JCGZ_13805 [Jatropha curcas]
7 Hb_004064_020 0.1729549445 - - hypothetical protein M569_06853, partial [Genlisea aurea]
8 Hb_000227_200 0.1804767501 - - PREDICTED: protein FANTASTIC FOUR 3 [Populus euphratica]
9 Hb_000042_240 0.1877936095 - - -
10 Hb_000784_040 0.1960209577 - - hypothetical protein POPTR_0013s11550g [Populus trichocarpa]
11 Hb_005568_010 0.2010575374 - - -
12 Hb_001425_050 0.2026491308 - - -
13 Hb_052941_010 0.2047333353 - - PREDICTED: probable peroxidase 61 [Jatropha curcas]
14 Hb_001842_130 0.2135195946 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003913_140 0.2168558843 - - PREDICTED: uncharacterized protein LOC105640324 [Jatropha curcas]
16 Hb_001741_040 0.2177451151 rubber biosynthesis Gene Name: REF3 REF-like stress related protein 1 [Hevea brasiliensis]
17 Hb_042223_010 0.2183291598 - - Protein Z, putative [Ricinus communis]
18 Hb_002045_200 0.221503183 - - PREDICTED: beta-carotene isomerase D27, chloroplastic [Jatropha curcas]
19 Hb_000995_070 0.224382729 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
20 Hb_000720_190 0.2243969025 - - unknown [Populus trichocarpa x Populus deltoides]

Gene co-expression network

sample Hb_010174_070 Hb_010174_070 Hb_179520_010 Hb_179520_010 Hb_010174_070--Hb_179520_010 Hb_108528_010 Hb_108528_010 Hb_010174_070--Hb_108528_010 Hb_001902_120 Hb_001902_120 Hb_010174_070--Hb_001902_120 Hb_064885_080 Hb_064885_080 Hb_010174_070--Hb_064885_080 Hb_001114_340 Hb_001114_340 Hb_010174_070--Hb_001114_340 Hb_004064_020 Hb_004064_020 Hb_010174_070--Hb_004064_020 Hb_179520_010--Hb_108528_010 Hb_000720_190 Hb_000720_190 Hb_179520_010--Hb_000720_190 Hb_179520_010--Hb_001902_120 Hb_179520_010--Hb_004064_020 Hb_001842_130 Hb_001842_130 Hb_179520_010--Hb_001842_130 Hb_108528_010--Hb_000720_190 Hb_108528_010--Hb_004064_020 Hb_108528_010--Hb_001902_120 Hb_003052_210 Hb_003052_210 Hb_108528_010--Hb_003052_210 Hb_002045_200 Hb_002045_200 Hb_001902_120--Hb_002045_200 Hb_052941_010 Hb_052941_010 Hb_001902_120--Hb_052941_010 Hb_005568_010 Hb_005568_010 Hb_001902_120--Hb_005568_010 Hb_001425_050 Hb_001425_050 Hb_001902_120--Hb_001425_050 Hb_064885_080--Hb_001114_340 Hb_064885_080--Hb_001842_130 Hb_064885_080--Hb_179520_010 Hb_000230_320 Hb_000230_320 Hb_064885_080--Hb_000230_320 Hb_000995_070 Hb_000995_070 Hb_064885_080--Hb_000995_070 Hb_001114_340--Hb_000995_070 Hb_100873_030 Hb_100873_030 Hb_001114_340--Hb_100873_030 Hb_042223_010 Hb_042223_010 Hb_001114_340--Hb_042223_010 Hb_000784_040 Hb_000784_040 Hb_001114_340--Hb_000784_040 Hb_105602_020 Hb_105602_020 Hb_004064_020--Hb_105602_020 Hb_003913_080 Hb_003913_080 Hb_004064_020--Hb_003913_080 Hb_008516_040 Hb_008516_040 Hb_004064_020--Hb_008516_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.02418 5.06517 11.2179 1.41635 0

CAGE analysis