Hb_010174_110

Information

Type -
Description -
Location Contig10174: 96859-101843
Sequence    

Annotation

kegg
ID rcu:RCOM_1082870
description hypothetical protein
nr
ID KDP26722.1
description hypothetical protein JCGZ_17880 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JS92
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17880 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00845: 96767-97428 , PASA_asmbl_00846: 97927-98626 , PASA_asmbl_00847: 99212-100106 , PASA_asmbl_00849: 102664-106078
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010174_110 0.0 - - hypothetical protein JCGZ_17880 [Jatropha curcas]
2 Hb_002740_110 0.0456847975 - - PREDICTED: phytochrome A [Jatropha curcas]
3 Hb_003253_040 0.0481415559 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
4 Hb_000002_010 0.0585912486 - - PREDICTED: uncharacterized protein LOC105641567 [Jatropha curcas]
5 Hb_000107_490 0.0648291626 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
6 Hb_004143_130 0.0673775121 - - PREDICTED: BEACH domain-containing protein lvsC [Jatropha curcas]
7 Hb_004994_220 0.0680373718 - - PREDICTED: K(+) efflux antiporter 2, chloroplastic-like isoform X2 [Jatropha curcas]
8 Hb_001341_170 0.0684353351 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]
9 Hb_006831_040 0.0690667034 - - PREDICTED: enhancer of mRNA-decapping protein 4-like isoform X1 [Jatropha curcas]
10 Hb_004032_380 0.0699115572 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Jatropha curcas]
11 Hb_004117_310 0.0719462009 - - PREDICTED: uncharacterized protein LOC105648043 [Jatropha curcas]
12 Hb_000494_070 0.0725099216 - - PREDICTED: protein ARABIDILLO 1-like [Jatropha curcas]
13 Hb_172632_110 0.0733599228 - - PREDICTED: pumilio homolog 5 [Jatropha curcas]
14 Hb_017862_020 0.0743767048 - - PREDICTED: probable inactive serine/threonine-protein kinase lvsG [Jatropha curcas]
15 Hb_000028_280 0.0767723283 transcription factor TF Family: NF-X1 PREDICTED: NF-X1-type zinc finger protein NFXL1 [Jatropha curcas]
16 Hb_001761_130 0.0771679581 - - PREDICTED: uncharacterized protein LOC105646118 isoform X1 [Jatropha curcas]
17 Hb_001199_100 0.0782203531 - - PREDICTED: uncharacterized protein LOC105639813 [Jatropha curcas]
18 Hb_000343_120 0.0795349343 - - PREDICTED: pentatricopeptide repeat-containing protein At3g16010 [Jatropha curcas]
19 Hb_000890_210 0.0803099377 - - PREDICTED: serine/threonine-protein kinase PBS1 isoform X1 [Eucalyptus grandis]
20 Hb_002063_020 0.0803686387 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17140 [Jatropha curcas]

Gene co-expression network

sample Hb_010174_110 Hb_010174_110 Hb_002740_110 Hb_002740_110 Hb_010174_110--Hb_002740_110 Hb_003253_040 Hb_003253_040 Hb_010174_110--Hb_003253_040 Hb_000002_010 Hb_000002_010 Hb_010174_110--Hb_000002_010 Hb_000107_490 Hb_000107_490 Hb_010174_110--Hb_000107_490 Hb_004143_130 Hb_004143_130 Hb_010174_110--Hb_004143_130 Hb_004994_220 Hb_004994_220 Hb_010174_110--Hb_004994_220 Hb_002740_110--Hb_003253_040 Hb_000028_280 Hb_000028_280 Hb_002740_110--Hb_000028_280 Hb_002740_110--Hb_004994_220 Hb_004032_380 Hb_004032_380 Hb_002740_110--Hb_004032_380 Hb_002740_110--Hb_004143_130 Hb_001199_100 Hb_001199_100 Hb_003253_040--Hb_001199_100 Hb_002942_100 Hb_002942_100 Hb_003253_040--Hb_002942_100 Hb_002063_020 Hb_002063_020 Hb_003253_040--Hb_002063_020 Hb_003253_040--Hb_004143_130 Hb_001341_170 Hb_001341_170 Hb_000002_010--Hb_001341_170 Hb_000002_010--Hb_000107_490 Hb_000556_160 Hb_000556_160 Hb_000002_010--Hb_000556_160 Hb_000111_290 Hb_000111_290 Hb_000002_010--Hb_000111_290 Hb_000002_010--Hb_003253_040 Hb_000245_040 Hb_000245_040 Hb_000107_490--Hb_000245_040 Hb_000890_210 Hb_000890_210 Hb_000107_490--Hb_000890_210 Hb_000107_490--Hb_000111_290 Hb_003370_030 Hb_003370_030 Hb_000107_490--Hb_003370_030 Hb_004724_150 Hb_004724_150 Hb_000107_490--Hb_004724_150 Hb_004143_130--Hb_000028_280 Hb_004143_130--Hb_002942_100 Hb_004143_130--Hb_004032_380 Hb_004994_220--Hb_001341_170 Hb_004994_220--Hb_000028_280 Hb_004994_220--Hb_000890_210 Hb_000260_270 Hb_000260_270 Hb_004994_220--Hb_000260_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.98361 2.6536 1.00922 1.47501 2.2928 2.56416
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.76012 1.56621 2.79734 3.38581 2.17113

CAGE analysis