Hb_010174_120

Information

Type -
Description -
Location Contig10174: 102592-106007
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa008746mg
description hypothetical protein
nr
ID XP_012471333.1
description PREDICTED: very-long-chain 3-oxoacyl-CoA reductase 1-like [Gossypium raimondii]
swissprot
ID Q8L9C4
description Very-long-chain 3-oxoacyl-CoA reductase 1 OS=Arabidopsis thaliana GN=KCR1 PE=1 SV=1
trembl
ID A0A0D2RLY4
description Gossypium raimondii chromosome 3, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_003G131700 PE=4 SV=1
Gene Ontology
ID GO:0004303
description very-long-chain 3-oxoacyl- reductase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00849: 102664-106078 , PASA_asmbl_00850: 106945-107376
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010174_120 0.0 - - PREDICTED: very-long-chain 3-oxoacyl-CoA reductase 1-like [Gossypium raimondii]
2 Hb_000387_080 0.0808178321 - - PREDICTED: protein IQ-DOMAIN 1 isoform X2 [Jatropha curcas]
3 Hb_000538_210 0.0914388824 - - ATP binding protein, putative [Ricinus communis]
4 Hb_001017_090 0.0976430068 - - -
5 Hb_010402_010 0.09864214 - - BnaC06g23470D [Brassica napus]
6 Hb_001476_100 0.0986856508 - - conserved hypothetical protein [Ricinus communis]
7 Hb_010174_130 0.0996660098 - - PREDICTED: regulator of G-protein signaling 1 [Jatropha curcas]
8 Hb_006602_020 0.1042394492 - - unknown [Medicago truncatula]
9 Hb_002357_040 0.1048238476 - - latex-abundant protein [Hevea brasiliensis]
10 Hb_005455_070 0.104969766 - - hypothetical protein POPTR_0001s04440g [Populus trichocarpa]
11 Hb_001141_470 0.1051739016 - - PREDICTED: uncharacterized protein LOC101254423 [Solanum lycopersicum]
12 Hb_000029_030 0.1070230704 - - PREDICTED: mitochondrial fission protein ELM1 [Jatropha curcas]
13 Hb_002498_100 0.1081106987 - - bcr-associated protein, bap, putative [Ricinus communis]
14 Hb_000696_110 0.1104756166 - - PREDICTED: la-related protein 1C-like isoform X1 [Jatropha curcas]
15 Hb_002506_010 0.1109640343 - - choline transporter-related family protein [Populus trichocarpa]
16 Hb_000258_430 0.1117801352 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
17 Hb_000173_170 0.1120333536 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
18 Hb_001366_220 0.1130264429 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001473_130 0.114273876 - - PREDICTED: ubiquinone biosynthesis monooxygenase COQ6 [Jatropha curcas]
20 Hb_003057_120 0.1146344152 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_010174_120 Hb_010174_120 Hb_000387_080 Hb_000387_080 Hb_010174_120--Hb_000387_080 Hb_000538_210 Hb_000538_210 Hb_010174_120--Hb_000538_210 Hb_001017_090 Hb_001017_090 Hb_010174_120--Hb_001017_090 Hb_010402_010 Hb_010402_010 Hb_010174_120--Hb_010402_010 Hb_001476_100 Hb_001476_100 Hb_010174_120--Hb_001476_100 Hb_010174_130 Hb_010174_130 Hb_010174_120--Hb_010174_130 Hb_003057_120 Hb_003057_120 Hb_000387_080--Hb_003057_120 Hb_001366_220 Hb_001366_220 Hb_000387_080--Hb_001366_220 Hb_000057_060 Hb_000057_060 Hb_000387_080--Hb_000057_060 Hb_011174_070 Hb_011174_070 Hb_000387_080--Hb_011174_070 Hb_006602_020 Hb_006602_020 Hb_000387_080--Hb_006602_020 Hb_000538_210--Hb_010402_010 Hb_000696_110 Hb_000696_110 Hb_000538_210--Hb_000696_110 Hb_000538_210--Hb_000387_080 Hb_000025_480 Hb_000025_480 Hb_000538_210--Hb_000025_480 Hb_000029_030 Hb_000029_030 Hb_000538_210--Hb_000029_030 Hb_002506_010 Hb_002506_010 Hb_001017_090--Hb_002506_010 Hb_001017_090--Hb_001476_100 Hb_009510_030 Hb_009510_030 Hb_001017_090--Hb_009510_030 Hb_010931_100 Hb_010931_100 Hb_001017_090--Hb_010931_100 Hb_000264_190 Hb_000264_190 Hb_001017_090--Hb_000264_190 Hb_000258_430 Hb_000258_430 Hb_001017_090--Hb_000258_430 Hb_004800_160 Hb_004800_160 Hb_010402_010--Hb_004800_160 Hb_000173_170 Hb_000173_170 Hb_010402_010--Hb_000173_170 Hb_002498_100 Hb_002498_100 Hb_010402_010--Hb_002498_100 Hb_010402_010--Hb_000025_480 Hb_002067_160 Hb_002067_160 Hb_001476_100--Hb_002067_160 Hb_001476_100--Hb_000696_110 Hb_001476_100--Hb_006602_020 Hb_000700_090 Hb_000700_090 Hb_001476_100--Hb_000700_090 Hb_001476_100--Hb_000057_060 Hb_001001_160 Hb_001001_160 Hb_010174_130--Hb_001001_160 Hb_010174_130--Hb_002506_010 Hb_010174_130--Hb_000696_110 Hb_003404_030 Hb_003404_030 Hb_010174_130--Hb_003404_030 Hb_010174_130--Hb_000029_030 Hb_000025_200 Hb_000025_200 Hb_010174_130--Hb_000025_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
324.61 20.6062 11.8922 72.1836 226.626 323.654
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
359.348 201.233 387.428 47.1933 41.2095

CAGE analysis