Hb_010174_150

Information

Type -
Description -
Location Contig10174: 132591-134688
Sequence    

Annotation

kegg
ID rcu:RCOM_1082560
description ubiquitin-protein ligase, putative
nr
ID XP_002515021.1
description ubiquitin-protein ligase, putative [Ricinus communis]
swissprot
ID Q5ZM74
description RING finger protein 141 OS=Gallus gallus GN=RNF141 PE=2 SV=1
trembl
ID B9RMQ2
description Ubiquitin-protein ligase, putative OS=Ricinus communis GN=RCOM_1082560 PE=4 SV=1
Gene Ontology
ID GO:0008270
description zinc finger family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010174_150 0.0 - - ubiquitin-protein ligase, putative [Ricinus communis]
2 Hb_002357_060 0.0873170454 - - hypothetical protein CICLE_v10006112mg [Citrus clementina]
3 Hb_001369_250 0.0902991907 - - PREDICTED: uncharacterized protein LOC105646469 isoform X1 [Jatropha curcas]
4 Hb_000347_450 0.090559534 - - PREDICTED: tRNA(His) guanylyltransferase 1-like isoform X2 [Jatropha curcas]
5 Hb_000227_070 0.0948815936 - - PREDICTED: ATP-dependent (S)-NAD(P)H-hydrate dehydratase isoform X2 [Jatropha curcas]
6 Hb_000012_410 0.0984949052 - - PREDICTED: histone deacetylase 2 isoform X1 [Jatropha curcas]
7 Hb_000210_120 0.0991164651 - - PREDICTED: uncharacterized protein LOC105635829 isoform X1 [Jatropha curcas]
8 Hb_001301_110 0.1066653856 - - PREDICTED: vacuolar protein sorting-associated protein 22 homolog 1 [Jatropha curcas]
9 Hb_000555_100 0.1072780773 - - hypothetical protein JCGZ_14689 [Jatropha curcas]
10 Hb_001019_050 0.1089092767 - - PREDICTED: importin-13 [Jatropha curcas]
11 Hb_002811_100 0.1090289918 - - PREDICTED: uncharacterized protein LOC105647658 [Jatropha curcas]
12 Hb_000179_270 0.109111538 - - hypothetical protein JCGZ_07444 [Jatropha curcas]
13 Hb_000847_060 0.1114615571 - - hypothetical protein [Jatropha curcas]
14 Hb_000159_120 0.1125573598 - - PREDICTED: uncharacterized protein LOC105632857 [Jatropha curcas]
15 Hb_005648_010 0.1125984057 - - PREDICTED: malate dehydrogenase, glyoxysomal isoform X1 [Jatropha curcas]
16 Hb_000167_010 0.112971781 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000367_090 0.1147843652 - - PREDICTED: plant intracellular Ras-group-related LRR protein 7 [Jatropha curcas]
18 Hb_010775_040 0.1177306237 - - PREDICTED: mediator of RNA polymerase II transcription subunit 4 [Jatropha curcas]
19 Hb_000510_240 0.1188986594 desease resistance Gene Name: PRK ATP binding protein, putative [Ricinus communis]
20 Hb_073171_100 0.1189376473 - - PREDICTED: clavaminate synthase-like protein At3g21360 [Jatropha curcas]

Gene co-expression network

sample Hb_010174_150 Hb_010174_150 Hb_002357_060 Hb_002357_060 Hb_010174_150--Hb_002357_060 Hb_001369_250 Hb_001369_250 Hb_010174_150--Hb_001369_250 Hb_000347_450 Hb_000347_450 Hb_010174_150--Hb_000347_450 Hb_000227_070 Hb_000227_070 Hb_010174_150--Hb_000227_070 Hb_000012_410 Hb_000012_410 Hb_010174_150--Hb_000012_410 Hb_000210_120 Hb_000210_120 Hb_010174_150--Hb_000210_120 Hb_005648_010 Hb_005648_010 Hb_002357_060--Hb_005648_010 Hb_000367_090 Hb_000367_090 Hb_002357_060--Hb_000367_090 Hb_023001_040 Hb_023001_040 Hb_002357_060--Hb_023001_040 Hb_004880_150 Hb_004880_150 Hb_002357_060--Hb_004880_150 Hb_000179_270 Hb_000179_270 Hb_002357_060--Hb_000179_270 Hb_000167_010 Hb_000167_010 Hb_002357_060--Hb_000167_010 Hb_002675_140 Hb_002675_140 Hb_001369_250--Hb_002675_140 Hb_000555_100 Hb_000555_100 Hb_001369_250--Hb_000555_100 Hb_010560_050 Hb_010560_050 Hb_001369_250--Hb_010560_050 Hb_001369_250--Hb_002357_060 Hb_000665_050 Hb_000665_050 Hb_001369_250--Hb_000665_050 Hb_011224_160 Hb_011224_160 Hb_000347_450--Hb_011224_160 Hb_000088_270 Hb_000088_270 Hb_000347_450--Hb_000088_270 Hb_000684_040 Hb_000684_040 Hb_000347_450--Hb_000684_040 Hb_050847_050 Hb_050847_050 Hb_000347_450--Hb_050847_050 Hb_010775_040 Hb_010775_040 Hb_000347_450--Hb_010775_040 Hb_000183_090 Hb_000183_090 Hb_000347_450--Hb_000183_090 Hb_000510_240 Hb_000510_240 Hb_000227_070--Hb_000510_240 Hb_016522_010 Hb_016522_010 Hb_000227_070--Hb_016522_010 Hb_001085_240 Hb_001085_240 Hb_000227_070--Hb_001085_240 Hb_000096_160 Hb_000096_160 Hb_000227_070--Hb_000096_160 Hb_179924_010 Hb_179924_010 Hb_000227_070--Hb_179924_010 Hb_000012_410--Hb_000227_070 Hb_000159_120 Hb_000159_120 Hb_000012_410--Hb_000159_120 Hb_000012_410--Hb_016522_010 Hb_000012_410--Hb_004880_150 Hb_002534_120 Hb_002534_120 Hb_000012_410--Hb_002534_120 Hb_005914_170 Hb_005914_170 Hb_000210_120--Hb_005914_170 Hb_000103_270 Hb_000103_270 Hb_000210_120--Hb_000103_270 Hb_003098_020 Hb_003098_020 Hb_000210_120--Hb_003098_020 Hb_007928_030 Hb_007928_030 Hb_000210_120--Hb_007928_030 Hb_011344_120 Hb_011344_120 Hb_000210_120--Hb_011344_120 Hb_000136_350 Hb_000136_350 Hb_000210_120--Hb_000136_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.72631 4.17336 3.33791 6.765 2.23085 3.05295
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.63653 7.14337 2.29247 9.22844 4.9576

CAGE analysis