Hb_010175_040

Information

Type -
Description -
Location Contig10175: 44795-48263
Sequence    

Annotation

kegg
ID rcu:RCOM_0338910
description cytochrome-c oxidase, putative
nr
ID XP_012079484.1
description PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Jatropha curcas]
swissprot
ID Q9T070
description Cytochrome c oxidase subunit 6a, mitochondrial OS=Arabidopsis thaliana GN=COX6A PE=2 SV=1
trembl
ID B9T167
description Cytochrome-c oxidase, putative OS=Ricinus communis GN=RCOM_0338910 PE=3 SV=1
Gene Ontology
ID GO:0005751
description cytochrome c oxidase subunit mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00873: 44871-48280 , PASA_asmbl_00874: 45933-46079 , PASA_asmbl_00875: 46280-46700 , PASA_asmbl_00876: 46701-47058
cDNA
(Sanger)
(ID:Location)		 001_H05.ab1: 44872-48281 , 002_J18.ab1: 44893-48236 , 004_A16.ab1: 44919-48292 , 004_B23.ab1: 44903-48279 , 013_N14.ab1: 44893-48276 , 014_L05.ab1: 44922-48295 , 018_I23.ab1: 44912-48232 , 030_B22.ab1: 44871-48292 , 031_M24.ab1: 44905-48246 , 036_D17.ab1: 44893-48276 , 053_E23.ab1: 44897-48236

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010175_040 0.0 - - PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Jatropha curcas]
2 Hb_000261_140 0.0522743892 - - -
3 Hb_000920_110 0.0564489476 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Jatropha curcas]
4 Hb_143496_010 0.0572180548 - - PREDICTED: 40S ribosomal protein S3-3 [Glycine max]
5 Hb_000417_360 0.0577418181 - - PREDICTED: hexaprenyldihydroxybenzoate methyltransferase, mitochondrial [Jatropha curcas]
6 Hb_001141_140 0.0618377379 - - 20S proteasome beta subunit D3 [Hevea brasiliensis]
7 Hb_001616_040 0.0627989381 - - PREDICTED: uncharacterized protein LOC105644362 [Jatropha curcas]
8 Hb_003226_100 0.0655139808 - - PREDICTED: 60S ribosomal protein L18-2 [Jatropha curcas]
9 Hb_000996_140 0.0673406214 - - PREDICTED: EKC/KEOPS complex subunit Tprkb [Jatropha curcas]
10 Hb_001484_070 0.0696573713 - - conserved hypothetical protein [Ricinus communis]
11 Hb_026053_020 0.0707940433 - - PREDICTED: uncharacterized protein LOC105643718 [Jatropha curcas]
12 Hb_007441_330 0.0725260162 - - PREDICTED: acyl carrier protein 1, mitochondrial [Jatropha curcas]
13 Hb_000340_570 0.0733435122 - - PREDICTED: RNA-binding protein BRN1 [Jatropha curcas]
14 Hb_143766_010 0.0765443633 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
15 Hb_000201_120 0.0767820078 - - ubiquitin-protein ligase 2a [Hevea brasiliensis]
16 Hb_000189_240 0.0778335106 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
17 Hb_003581_150 0.0786388934 - - hypothetical protein CICLE_v10032366mg [Citrus clementina]
18 Hb_002830_020 0.0809360852 - - PREDICTED: outer envelope pore protein 16-3, chloroplastic/mitochondrial [Jatropha curcas]
19 Hb_002995_020 0.0810356339 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
20 Hb_001047_230 0.0813149959 - - WD-repeat protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_010175_040 Hb_010175_040 Hb_000261_140 Hb_000261_140 Hb_010175_040--Hb_000261_140 Hb_000920_110 Hb_000920_110 Hb_010175_040--Hb_000920_110 Hb_143496_010 Hb_143496_010 Hb_010175_040--Hb_143496_010 Hb_000417_360 Hb_000417_360 Hb_010175_040--Hb_000417_360 Hb_001141_140 Hb_001141_140 Hb_010175_040--Hb_001141_140 Hb_001616_040 Hb_001616_040 Hb_010175_040--Hb_001616_040 Hb_001123_130 Hb_001123_130 Hb_000261_140--Hb_001123_130 Hb_000261_140--Hb_000920_110 Hb_001484_070 Hb_001484_070 Hb_000261_140--Hb_001484_070 Hb_000638_250 Hb_000638_250 Hb_000261_140--Hb_000638_250 Hb_004143_150 Hb_004143_150 Hb_000261_140--Hb_004143_150 Hb_003226_100 Hb_003226_100 Hb_000920_110--Hb_003226_100 Hb_002056_050 Hb_002056_050 Hb_000920_110--Hb_002056_050 Hb_000920_110--Hb_001484_070 Hb_000479_090 Hb_000479_090 Hb_000920_110--Hb_000479_090 Hb_000920_110--Hb_001616_040 Hb_143496_010--Hb_003226_100 Hb_017491_060 Hb_017491_060 Hb_143496_010--Hb_017491_060 Hb_143496_010--Hb_001141_140 Hb_003018_020 Hb_003018_020 Hb_143496_010--Hb_003018_020 Hb_000699_160 Hb_000699_160 Hb_143496_010--Hb_000699_160 Hb_091433_020 Hb_091433_020 Hb_000417_360--Hb_091433_020 Hb_000417_360--Hb_000920_110 Hb_000731_190 Hb_000731_190 Hb_000417_360--Hb_000731_190 Hb_001085_120 Hb_001085_120 Hb_000417_360--Hb_001085_120 Hb_000417_360--Hb_000261_140 Hb_006925_040 Hb_006925_040 Hb_001141_140--Hb_006925_040 Hb_000735_040 Hb_000735_040 Hb_001141_140--Hb_000735_040 Hb_001141_140--Hb_003226_100 Hb_007044_130 Hb_007044_130 Hb_001141_140--Hb_007044_130 Hb_001141_140--Hb_003018_020 Hb_006541_010 Hb_006541_010 Hb_001616_040--Hb_006541_010 Hb_001016_030 Hb_001016_030 Hb_001616_040--Hb_001016_030 Hb_000030_290 Hb_000030_290 Hb_001616_040--Hb_000030_290 Hb_001616_040--Hb_003226_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
175.108 99.6602 186.009 195.331 143.431 147.626
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
378.318 551.186 282.389 139.495 104.817

CAGE analysis