Hb_010175_060

Information

Type -
Description -
Location Contig10175: 55411-59385
Sequence    

Annotation

kegg
ID rcu:RCOM_0339140
description hypothetical protein
nr
ID XP_002531996.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T170
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0339140 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010175_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000487_140 0.1577528648 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
3 Hb_001158_080 0.1657195469 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
4 Hb_157263_010 0.166683576 - - PREDICTED: monomethylxanthine methyltransferase 2-like isoform X4 [Jatropha curcas]
5 Hb_050241_010 0.1668040454 - - PREDICTED: uncharacterized protein LOC105129233 isoform X1 [Populus euphratica]
6 Hb_003805_080 0.1696831523 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
7 Hb_002072_020 0.1716250023 - - hypothetical protein JCGZ_16057 [Jatropha curcas]
8 Hb_002551_090 0.1758914235 - - hypothetical protein JCGZ_17224 [Jatropha curcas]
9 Hb_008140_060 0.1766910865 - - Cytochrome P450, putative [Theobroma cacao]
10 Hb_000761_030 0.1778812981 transcription factor TF Family: ERF Transcriptional factor TINY, putative [Ricinus communis]
11 Hb_009642_010 0.1791962063 - - Disease resistance protein RFL1, putative [Ricinus communis]
12 Hb_003787_060 0.1807977699 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
13 Hb_010326_030 0.181322594 - - PREDICTED: abscisic acid 8'-hydroxylase 4-like [Jatropha curcas]
14 Hb_094637_010 0.1816979012 - - PREDICTED: uncharacterized protein LOC105642042 [Jatropha curcas]
15 Hb_003052_120 0.1822195636 - - hypothetical protein POPTR_0008s10970g [Populus trichocarpa]
16 Hb_003058_180 0.1823814509 transcription factor TF Family: HSF hypothetical protein POPTR_0001s28040g [Populus trichocarpa]
17 Hb_008001_020 0.1825657257 transcription factor TF Family: GRAS PREDICTED: protein SHORT-ROOT-like [Populus euphratica]
18 Hb_001863_080 0.1827274185 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Jatropha curcas]
19 Hb_001493_170 0.1832505249 - - PREDICTED: uncharacterized protein LOC105631328 [Jatropha curcas]
20 Hb_028008_030 0.1866510069 - - probable xyloglucan endotransglucosylase/hydrolase protein 23 precursor [Malus domestica]

Gene co-expression network

sample Hb_010175_060 Hb_010175_060 Hb_000487_140 Hb_000487_140 Hb_010175_060--Hb_000487_140 Hb_001158_080 Hb_001158_080 Hb_010175_060--Hb_001158_080 Hb_157263_010 Hb_157263_010 Hb_010175_060--Hb_157263_010 Hb_050241_010 Hb_050241_010 Hb_010175_060--Hb_050241_010 Hb_003805_080 Hb_003805_080 Hb_010175_060--Hb_003805_080 Hb_002072_020 Hb_002072_020 Hb_010175_060--Hb_002072_020 Hb_003058_180 Hb_003058_180 Hb_000487_140--Hb_003058_180 Hb_000487_140--Hb_003805_080 Hb_006120_010 Hb_006120_010 Hb_000487_140--Hb_006120_010 Hb_000761_030 Hb_000761_030 Hb_000487_140--Hb_000761_030 Hb_001863_080 Hb_001863_080 Hb_000487_140--Hb_001863_080 Hb_188923_010 Hb_188923_010 Hb_000487_140--Hb_188923_010 Hb_000934_290 Hb_000934_290 Hb_001158_080--Hb_000934_290 Hb_002551_090 Hb_002551_090 Hb_001158_080--Hb_002551_090 Hb_184942_010 Hb_184942_010 Hb_001158_080--Hb_184942_010 Hb_008140_060 Hb_008140_060 Hb_001158_080--Hb_008140_060 Hb_009642_010 Hb_009642_010 Hb_001158_080--Hb_009642_010 Hb_003787_060 Hb_003787_060 Hb_001158_080--Hb_003787_060 Hb_157263_010--Hb_050241_010 Hb_006588_030 Hb_006588_030 Hb_157263_010--Hb_006588_030 Hb_000189_490 Hb_000189_490 Hb_157263_010--Hb_000189_490 Hb_001493_170 Hb_001493_170 Hb_157263_010--Hb_001493_170 Hb_004122_030 Hb_004122_030 Hb_157263_010--Hb_004122_030 Hb_050241_010--Hb_008140_060 Hb_050241_010--Hb_001158_080 Hb_000844_100 Hb_000844_100 Hb_050241_010--Hb_000844_100 Hb_050241_010--Hb_000934_290 Hb_050241_010--Hb_002551_090 Hb_003788_010 Hb_003788_010 Hb_050241_010--Hb_003788_010 Hb_003805_080--Hb_003787_060 Hb_028008_030 Hb_028008_030 Hb_003805_080--Hb_028008_030 Hb_039496_010 Hb_039496_010 Hb_003805_080--Hb_039496_010 Hb_003805_080--Hb_188923_010 Hb_000230_160 Hb_000230_160 Hb_003805_080--Hb_000230_160 Hb_003805_080--Hb_003058_180 Hb_000003_510 Hb_000003_510 Hb_002072_020--Hb_000003_510 Hb_000976_440 Hb_000976_440 Hb_002072_020--Hb_000976_440 Hb_048476_010 Hb_048476_010 Hb_002072_020--Hb_048476_010 Hb_032050_050 Hb_032050_050 Hb_002072_020--Hb_032050_050 Hb_000077_330 Hb_000077_330 Hb_002072_020--Hb_000077_330 Hb_009823_010 Hb_009823_010 Hb_002072_020--Hb_009823_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0240655 0.226903 0.00894323 0.26628 0 0.0329213
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.506631 0.0452743

CAGE analysis