Hb_010180_020

Information

Type -
Description -
Location Contig10180: 28918-29223
Sequence    

Annotation

kegg
ID gmx:100306178
description uncharacterized LOC100306178
nr
ID KHN26440.1
description hypothetical protein glysoja_030394 [Glycine soja]
swissprot
ID -
description -
trembl
ID A0A0B2QY12
description Uncharacterized protein OS=Glycine soja GN=glysoja_030394 PE=4 SV=1
Gene Ontology
ID GO:0006635
description protein daple

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00890: 10736-29748 , PASA_asmbl_00893: 28086-28676
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010180_020 0.0 - - hypothetical protein glysoja_030394 [Glycine soja]
2 Hb_001604_080 0.0435292542 - - PREDICTED: uncharacterized protein LOC105638437 [Jatropha curcas]
3 Hb_004545_060 0.0592580601 - - PREDICTED: trafficking protein particle complex subunit 6B [Jatropha curcas]
4 Hb_004306_020 0.0610058314 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Jatropha curcas]
5 Hb_002411_170 0.0637832803 - - PREDICTED: cilia- and flagella-associated protein 20 [Jatropha curcas]
6 Hb_000024_080 0.0654267796 - - PREDICTED: probable complex I intermediate-associated protein 30 isoform X2 [Jatropha curcas]
7 Hb_000815_040 0.0664340187 transcription factor TF Family: M-type hypothetical protein JCGZ_15623 [Jatropha curcas]
8 Hb_168054_010 0.0685381465 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP18-1 [Elaeis guineensis]
9 Hb_000103_560 0.0710634827 - - ADP-ribosylation factor, putative [Ricinus communis]
10 Hb_003687_110 0.0714233233 - - PREDICTED: uncharacterized protein At4g14342 isoform X1 [Malus domestica]
11 Hb_001369_660 0.0726354466 - - hypothetical protein B456_001G174200, partial [Gossypium raimondii]
12 Hb_002078_150 0.0755804917 - - protein with unknown function [Ricinus communis]
13 Hb_010180_010 0.0758001413 - - PREDICTED: uncharacterized protein LOC105631104 [Jatropha curcas]
14 Hb_000045_090 0.0758183836 - - PREDICTED: syntaxin-31 [Jatropha curcas]
15 Hb_004128_190 0.0766959419 - - PREDICTED: dirigent protein 17-like [Jatropha curcas]
16 Hb_004440_050 0.0772006629 - - PREDICTED: anaphase-promoting complex subunit 10 [Cucumis melo]
17 Hb_000529_190 0.0787282419 - - PREDICTED: magnesium-dependent phosphatase 1-like [Jatropha curcas]
18 Hb_018133_060 0.0790409307 - - PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like [Jatropha curcas]
19 Hb_125000_010 0.0792386632 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
20 Hb_002207_110 0.079926217 - - -

Gene co-expression network

sample Hb_010180_020 Hb_010180_020 Hb_001604_080 Hb_001604_080 Hb_010180_020--Hb_001604_080 Hb_004545_060 Hb_004545_060 Hb_010180_020--Hb_004545_060 Hb_004306_020 Hb_004306_020 Hb_010180_020--Hb_004306_020 Hb_002411_170 Hb_002411_170 Hb_010180_020--Hb_002411_170 Hb_000024_080 Hb_000024_080 Hb_010180_020--Hb_000024_080 Hb_000815_040 Hb_000815_040 Hb_010180_020--Hb_000815_040 Hb_001604_080--Hb_000815_040 Hb_000103_560 Hb_000103_560 Hb_001604_080--Hb_000103_560 Hb_063716_050 Hb_063716_050 Hb_001604_080--Hb_063716_050 Hb_000926_250 Hb_000926_250 Hb_001604_080--Hb_000926_250 Hb_000529_190 Hb_000529_190 Hb_001604_080--Hb_000529_190 Hb_000045_090 Hb_000045_090 Hb_004545_060--Hb_000045_090 Hb_002078_150 Hb_002078_150 Hb_004545_060--Hb_002078_150 Hb_004545_060--Hb_000103_560 Hb_141131_010 Hb_141131_010 Hb_004545_060--Hb_141131_010 Hb_003038_030 Hb_003038_030 Hb_004545_060--Hb_003038_030 Hb_010180_010 Hb_010180_010 Hb_004306_020--Hb_010180_010 Hb_004306_020--Hb_004545_060 Hb_002207_110 Hb_002207_110 Hb_004306_020--Hb_002207_110 Hb_004306_020--Hb_000024_080 Hb_005686_060 Hb_005686_060 Hb_004306_020--Hb_005686_060 Hb_004440_050 Hb_004440_050 Hb_002411_170--Hb_004440_050 Hb_002411_170--Hb_003038_030 Hb_125000_010 Hb_125000_010 Hb_002411_170--Hb_125000_010 Hb_148912_010 Hb_148912_010 Hb_002411_170--Hb_148912_010 Hb_002411_170--Hb_001604_080 Hb_000087_020 Hb_000087_020 Hb_000024_080--Hb_000087_020 Hb_004032_100 Hb_004032_100 Hb_000024_080--Hb_004032_100 Hb_000676_290 Hb_000676_290 Hb_000024_080--Hb_000676_290 Hb_004128_190 Hb_004128_190 Hb_000024_080--Hb_004128_190 Hb_005398_030 Hb_005398_030 Hb_000024_080--Hb_005398_030 Hb_002890_140 Hb_002890_140 Hb_000815_040--Hb_002890_140 Hb_000815_040--Hb_000103_560 Hb_002214_040 Hb_002214_040 Hb_000815_040--Hb_002214_040 Hb_000815_040--Hb_000529_190 Hb_118707_030 Hb_118707_030 Hb_000815_040--Hb_118707_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
71.0546 22.2517 36.9741 53.2801 57.6923 115.4
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
97.2564 115.563 68.9081 28.033 23.6534

CAGE analysis