Hb_010180_030

Information

Type -
Description -
Location Contig10180: 59985-62759
Sequence    

Annotation

kegg
ID rcu:RCOM_0215070
description hypothetical protein
nr
ID XP_012089706.1
description PREDICTED: WEB family protein At2g38370-like [Jatropha curcas]
swissprot
ID F4ISY0
description WEB family protein At2g38370 OS=Arabidopsis thaliana GN=At2g38370 PE=2 SV=1
trembl
ID A0A067JFW2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00373 PE=4 SV=1
Gene Ontology
ID GO:0006629
description web family protein at2g38370

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00894: 61398-62797
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010180_030 0.0 - - PREDICTED: WEB family protein At2g38370-like [Jatropha curcas]
2 Hb_001478_020 0.0625657074 desease resistance Gene Name: AAA thyroid hormone receptor interactor, putative [Ricinus communis]
3 Hb_003784_040 0.0897189902 - - Afadin- and alpha-actinin-binding protein, putative [Ricinus communis]
4 Hb_001501_070 0.1013395308 - - PREDICTED: condensin complex subunit 2 [Jatropha curcas]
5 Hb_001780_080 0.1101311037 - - PREDICTED: tubulin beta-2 chain [Jatropha curcas]
6 Hb_005725_150 0.1103046004 - - PREDICTED: kinesin-related protein 11 isoform X1 [Jatropha curcas]
7 Hb_005504_040 0.1136791619 - - conserved hypothetical protein [Ricinus communis]
8 Hb_029510_130 0.1220630638 - - PREDICTED: malonate--CoA ligase [Jatropha curcas]
9 Hb_001584_360 0.1222844287 - - PREDICTED: serine/threonine-protein kinase haspin homolog hrk1 [Jatropha curcas]
10 Hb_038044_010 0.1257657608 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
11 Hb_000365_210 0.1265070324 - - PREDICTED: cell division control protein 2 homolog C [Jatropha curcas]
12 Hb_002007_040 0.1350175358 - - unnamed protein product [Coffea canephora]
13 Hb_000051_080 0.1411791378 - - PREDICTED: DNA (cytosine-5)-methyltransferase CMT3 [Jatropha curcas]
14 Hb_002007_280 0.1429229638 - - PREDICTED: kinesin-like protein KIFC3 [Jatropha curcas]
15 Hb_000500_340 0.1479186569 - - PREDICTED: exonuclease 1 [Jatropha curcas]
16 Hb_011360_130 0.150227145 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000288_090 0.1511431326 - - unnamed protein product [Vitis vinifera]
18 Hb_001890_020 0.1515831682 - - hypothetical protein CICLE_v10025198mg [Citrus clementina]
19 Hb_000139_280 0.1550809893 - - PREDICTED: mitogen-activated protein kinase kinase kinase NPK1 isoform X1 [Jatropha curcas]
20 Hb_000960_090 0.1656296017 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_010180_030 Hb_010180_030 Hb_001478_020 Hb_001478_020 Hb_010180_030--Hb_001478_020 Hb_003784_040 Hb_003784_040 Hb_010180_030--Hb_003784_040 Hb_001501_070 Hb_001501_070 Hb_010180_030--Hb_001501_070 Hb_001780_080 Hb_001780_080 Hb_010180_030--Hb_001780_080 Hb_005725_150 Hb_005725_150 Hb_010180_030--Hb_005725_150 Hb_005504_040 Hb_005504_040 Hb_010180_030--Hb_005504_040 Hb_001478_020--Hb_001501_070 Hb_038044_010 Hb_038044_010 Hb_001478_020--Hb_038044_010 Hb_001478_020--Hb_001780_080 Hb_001478_020--Hb_003784_040 Hb_029510_130 Hb_029510_130 Hb_001478_020--Hb_029510_130 Hb_003784_040--Hb_005504_040 Hb_000139_280 Hb_000139_280 Hb_003784_040--Hb_000139_280 Hb_003784_040--Hb_005725_150 Hb_003784_040--Hb_001780_080 Hb_001501_070--Hb_038044_010 Hb_000365_210 Hb_000365_210 Hb_001501_070--Hb_000365_210 Hb_001501_070--Hb_029510_130 Hb_024973_020 Hb_024973_020 Hb_001501_070--Hb_024973_020 Hb_001780_080--Hb_001501_070 Hb_001780_080--Hb_000139_280 Hb_001780_080--Hb_000365_210 Hb_000051_080 Hb_000051_080 Hb_005725_150--Hb_000051_080 Hb_005725_150--Hb_001478_020 Hb_002007_040 Hb_002007_040 Hb_005725_150--Hb_002007_040 Hb_006275_060 Hb_006275_060 Hb_005725_150--Hb_006275_060 Hb_005504_040--Hb_000139_280 Hb_005504_040--Hb_001780_080 Hb_005504_040--Hb_006275_060 Hb_005504_040--Hb_005725_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.956947 0.612197 25.7872 9.07986 0.312745 0.44551
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.35192 1.11606 2.41507 3.24637 2.02792

CAGE analysis