Hb_010180_060

Information

Type -
Description -
Location Contig10180: 81087-86185
Sequence    

Annotation

kegg
ID rcu:RCOM_0215600
description hypothetical protein
nr
ID XP_012089702.1
description PREDICTED: uncharacterized protein LOC105648049 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JJ13
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00370 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00900: 80273-86496
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010180_060 0.0 - - PREDICTED: uncharacterized protein LOC105648049 [Jatropha curcas]
2 Hb_002521_020 0.0510082926 - - PREDICTED: pentatricopeptide repeat-containing protein At1g03100, mitochondrial-like isoform X2 [Jatropha curcas]
3 Hb_008053_040 0.0711391611 - - PREDICTED: mediator of RNA polymerase II transcription subunit 12-like [Pyrus x bretschneideri]
4 Hb_006839_010 0.0806625256 - - PREDICTED: importin subunit beta-1-like [Jatropha curcas]
5 Hb_005488_170 0.0834693352 - - PREDICTED: septin and tuftelin-interacting protein 1 homolog 1 [Jatropha curcas]
6 Hb_000059_230 0.0848596123 - - PREDICTED: uncharacterized protein LOC105648049 [Jatropha curcas]
7 Hb_003805_040 0.0857008996 - - Sacsin [Glycine soja]
8 Hb_009486_170 0.0862988058 - - PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]
9 Hb_002909_120 0.0866220638 - - PREDICTED: transcription elongation factor SPT6 [Jatropha curcas]
10 Hb_001133_030 0.0877390374 - - PREDICTED: MAG2-interacting protein 2-like [Jatropha curcas]
11 Hb_000665_230 0.0882488969 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
12 Hb_140627_020 0.0883686404 - - PREDICTED: uncharacterized protein LOC105637253 isoform X1 [Jatropha curcas]
13 Hb_005186_040 0.0899908274 - - PREDICTED: mediator of RNA polymerase II transcription subunit 13 isoform X2 [Jatropha curcas]
14 Hb_000720_130 0.0903183717 - - hypothetical protein PRUPE_ppa012392mg [Prunus persica]
15 Hb_021596_010 0.0907406013 - - PREDICTED: uncharacterized protein LOC105647118 [Jatropha curcas]
16 Hb_007575_080 0.0909671877 - - PREDICTED: lysine-specific histone demethylase 1 homolog 3 [Jatropha curcas]
17 Hb_013358_010 0.0911254331 - - hypothetical protein JCGZ_07102 [Jatropha curcas]
18 Hb_000811_060 0.0941831509 - - PREDICTED: uncharacterized protein LOC105650696 [Jatropha curcas]
19 Hb_007632_010 0.0947257493 - - PREDICTED: E3 ubiquitin-protein ligase UPL1 isoform X1 [Jatropha curcas]
20 Hb_001124_050 0.0952076273 transcription factor TF Family: SNF2 PREDICTED: chromatin structure-remodeling complex protein SYD-like [Jatropha curcas]

Gene co-expression network

sample Hb_010180_060 Hb_010180_060 Hb_002521_020 Hb_002521_020 Hb_010180_060--Hb_002521_020 Hb_008053_040 Hb_008053_040 Hb_010180_060--Hb_008053_040 Hb_006839_010 Hb_006839_010 Hb_010180_060--Hb_006839_010 Hb_005488_170 Hb_005488_170 Hb_010180_060--Hb_005488_170 Hb_000059_230 Hb_000059_230 Hb_010180_060--Hb_000059_230 Hb_003805_040 Hb_003805_040 Hb_010180_060--Hb_003805_040 Hb_005186_040 Hb_005186_040 Hb_002521_020--Hb_005186_040 Hb_001133_030 Hb_001133_030 Hb_002521_020--Hb_001133_030 Hb_001124_050 Hb_001124_050 Hb_002521_020--Hb_001124_050 Hb_009486_170 Hb_009486_170 Hb_002521_020--Hb_009486_170 Hb_001377_100 Hb_001377_100 Hb_002521_020--Hb_001377_100 Hb_007575_080 Hb_007575_080 Hb_008053_040--Hb_007575_080 Hb_008053_040--Hb_003805_040 Hb_008053_040--Hb_005186_040 Hb_008053_040--Hb_002521_020 Hb_000665_230 Hb_000665_230 Hb_008053_040--Hb_000665_230 Hb_024185_010 Hb_024185_010 Hb_008053_040--Hb_024185_010 Hb_006839_010--Hb_000059_230 Hb_009288_020 Hb_009288_020 Hb_006839_010--Hb_009288_020 Hb_004374_110 Hb_004374_110 Hb_006839_010--Hb_004374_110 Hb_003040_050 Hb_003040_050 Hb_006839_010--Hb_003040_050 Hb_005215_010 Hb_005215_010 Hb_006839_010--Hb_005215_010 Hb_006839_010--Hb_001377_100 Hb_002600_060 Hb_002600_060 Hb_005488_170--Hb_002600_060 Hb_005701_130 Hb_005701_130 Hb_005488_170--Hb_005701_130 Hb_002909_120 Hb_002909_120 Hb_005488_170--Hb_002909_120 Hb_010998_020 Hb_010998_020 Hb_005488_170--Hb_010998_020 Hb_012053_090 Hb_012053_090 Hb_005488_170--Hb_012053_090 Hb_005348_010 Hb_005348_010 Hb_005488_170--Hb_005348_010 Hb_000059_230--Hb_009288_020 Hb_000684_350 Hb_000684_350 Hb_000059_230--Hb_000684_350 Hb_000059_230--Hb_001377_100 Hb_012055_110 Hb_012055_110 Hb_000059_230--Hb_012055_110 Hb_000059_230--Hb_003040_050 Hb_003805_040--Hb_009486_170 Hb_003805_040--Hb_000665_230 Hb_003805_040--Hb_001133_030 Hb_011202_020 Hb_011202_020 Hb_003805_040--Hb_011202_020 Hb_003805_040--Hb_002521_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.87582 23.267 6.62143 14.0025 13.5896 10.0971
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.93258 4.89566 11.5909 12.1928 23.046

CAGE analysis