Hb_010189_010

Information

Type -
Description -
Location Contig10189: 5781-7464
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00907: 6745-7363
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010189_010 0.0 - - -
2 Hb_000211_090 0.0836614508 - - hypothetical protein PHAVU_011G023400g, partial [Phaseolus vulgaris]
3 Hb_000792_110 0.0844515029 - - PREDICTED: E3 ubiquitin-protein ligase Hakai [Jatropha curcas]
4 Hb_000213_060 0.0857228978 - - PREDICTED: RRP12-like protein isoform X1 [Jatropha curcas]
5 Hb_002837_070 0.0869905996 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 8-like isoform X1 [Jatropha curcas]
6 Hb_005000_270 0.0955074182 - - unnamed protein product [Vitis vinifera]
7 Hb_002918_070 0.0955307992 - - hypothetical protein POPTR_0011s05530g [Populus trichocarpa]
8 Hb_000779_040 0.0984209178 - - PREDICTED: protein FLX-like 4 [Jatropha curcas]
9 Hb_003673_020 0.1034262513 - - hypothetical protein JCGZ_20998 [Jatropha curcas]
10 Hb_113216_010 0.1074381137 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
11 Hb_174865_050 0.1078904024 - - PREDICTED: neuroguidin [Jatropha curcas]
12 Hb_019871_020 0.1101344551 - - PREDICTED: uncharacterized protein LOC105642047 [Jatropha curcas]
13 Hb_004531_090 0.1108091224 - - PREDICTED: VHS domain-containing protein At3g16270 [Jatropha curcas]
14 Hb_007348_030 0.1140188461 - - PREDICTED: uncharacterized protein LOC105645596 isoform X2 [Jatropha curcas]
15 Hb_000016_180 0.1147216505 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
16 Hb_000035_400 0.1149516029 - - PREDICTED: lariat debranching enzyme-like [Citrus sinensis]
17 Hb_061256_030 0.1154907866 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
18 Hb_000212_280 0.1164599035 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Gossypium raimondii]
19 Hb_000890_220 0.1167579051 transcription factor TF Family: SNF2 PREDICTED: putative chromatin-remodeling complex ATPase chain isoform X1 [Jatropha curcas]
20 Hb_035360_010 0.1172118726 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_010189_010 Hb_010189_010 Hb_000211_090 Hb_000211_090 Hb_010189_010--Hb_000211_090 Hb_000792_110 Hb_000792_110 Hb_010189_010--Hb_000792_110 Hb_000213_060 Hb_000213_060 Hb_010189_010--Hb_000213_060 Hb_002837_070 Hb_002837_070 Hb_010189_010--Hb_002837_070 Hb_005000_270 Hb_005000_270 Hb_010189_010--Hb_005000_270 Hb_002918_070 Hb_002918_070 Hb_010189_010--Hb_002918_070 Hb_000779_040 Hb_000779_040 Hb_000211_090--Hb_000779_040 Hb_000211_090--Hb_000792_110 Hb_000211_090--Hb_002918_070 Hb_000890_220 Hb_000890_220 Hb_000211_090--Hb_000890_220 Hb_003666_050 Hb_003666_050 Hb_000211_090--Hb_003666_050 Hb_003673_020 Hb_003673_020 Hb_000211_090--Hb_003673_020 Hb_000792_110--Hb_000779_040 Hb_000792_110--Hb_000890_220 Hb_035360_010 Hb_035360_010 Hb_000792_110--Hb_035360_010 Hb_012760_200 Hb_012760_200 Hb_000792_110--Hb_012760_200 Hb_113216_010 Hb_113216_010 Hb_000213_060--Hb_113216_010 Hb_000016_180 Hb_000016_180 Hb_000213_060--Hb_000016_180 Hb_000185_090 Hb_000185_090 Hb_000213_060--Hb_000185_090 Hb_000466_060 Hb_000466_060 Hb_000213_060--Hb_000466_060 Hb_000213_060--Hb_002918_070 Hb_061256_030 Hb_061256_030 Hb_002837_070--Hb_061256_030 Hb_002837_070--Hb_113216_010 Hb_174865_050 Hb_174865_050 Hb_002837_070--Hb_174865_050 Hb_000212_280 Hb_000212_280 Hb_002837_070--Hb_000212_280 Hb_002837_070--Hb_000211_090 Hb_001582_030 Hb_001582_030 Hb_005000_270--Hb_001582_030 Hb_005000_270--Hb_002918_070 Hb_000134_360 Hb_000134_360 Hb_005000_270--Hb_000134_360 Hb_005129_050 Hb_005129_050 Hb_005000_270--Hb_005129_050 Hb_005000_270--Hb_000212_280 Hb_003716_020 Hb_003716_020 Hb_005000_270--Hb_003716_020 Hb_002918_070--Hb_000212_280 Hb_001486_120 Hb_001486_120 Hb_002918_070--Hb_001486_120 Hb_002918_070--Hb_000779_040 Hb_002918_070--Hb_000134_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
72.8824 18.984 8.93163 7.51565 70.0879 106.085
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.4908 12.3354 9.62424 7.48016 7.51692

CAGE analysis