Hb_010193_020

Information

Type -
Description -
Location Contig10193: 19166-21511
Sequence    

Annotation

kegg
ID pop:POPTR_0010s25300g
description POPTRDRAFT_725354; hypothetical protein
nr
ID XP_012070560.1
description PREDICTED: NADH--cytochrome b5 reductase 1-like [Jatropha curcas]
swissprot
ID Q9ZNT1
description NADH--cytochrome b5 reductase 1 OS=Arabidopsis thaliana GN=CBR1 PE=1 SV=1
trembl
ID B9HVG3
description NADH-cytochrome b5 reductase OS=Populus trichocarpa GN=POPTR_0010s25300g PE=3 SV=2
Gene Ontology
ID GO:0004128
description nadh--cytochrome b5 reductase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00949: 18957-20948
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010193_020 0.0 - - PREDICTED: NADH--cytochrome b5 reductase 1-like [Jatropha curcas]
2 Hb_011344_040 0.0687703717 - - PREDICTED: 21 kDa protein [Jatropha curcas]
3 Hb_011709_010 0.069547404 - - PREDICTED: phytosulfokine receptor 1-like [Jatropha curcas]
4 Hb_185608_010 0.0783988511 - - hypothetical protein POPTR_0004s22210g [Populus trichocarpa]
5 Hb_057862_010 0.0825286536 - - protein binding protein, putative [Ricinus communis]
6 Hb_049955_010 0.0841774458 - - hypothetical protein EUGRSUZ_B00742 [Eucalyptus grandis]
7 Hb_005269_060 0.0955130457 - - PREDICTED: rac-like GTP-binding protein RAC2 [Cicer arietinum]
8 Hb_142204_010 0.1031887126 - - pyruvate decarboxylase [Saccharum officinarum]
9 Hb_031579_010 0.105006526 - - JHL22C18.10 [Jatropha curcas]
10 Hb_000343_070 0.1055316249 - - hypothetical protein JCGZ_06265 [Jatropha curcas]
11 Hb_001357_290 0.1074469268 - - PREDICTED: uncharacterized protein LOC105632986 [Jatropha curcas]
12 Hb_000130_250 0.1078826714 - - PREDICTED: protein trichome birefringence-like 31 [Jatropha curcas]
13 Hb_009252_070 0.1120149144 - - hypothetical protein JCGZ_11488 [Jatropha curcas]
14 Hb_011082_030 0.1137315769 - - hypothetical protein RCOM_0852210 [Ricinus communis]
15 Hb_007382_110 0.1143070196 - - PREDICTED: bidirectional sugar transporter N3 [Jatropha curcas]
16 Hb_061256_020 0.1156208688 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
17 Hb_000414_090 0.1166975669 - - conserved hypothetical protein [Ricinus communis]
18 Hb_152868_020 0.1168434161 - - RecName: Full=2-methylbutanal oxime monooxygenase; AltName: Full=Cytochrome P450 71E7 [Manihot esculenta]
19 Hb_003858_010 0.1187165503 - - xyloglucan endotransglucosylase/hydrolase [Gossypium hirsutum]
20 Hb_000227_360 0.1196226164 - - PREDICTED: mavicyanin [Jatropha curcas]

Gene co-expression network

sample Hb_010193_020 Hb_010193_020 Hb_011344_040 Hb_011344_040 Hb_010193_020--Hb_011344_040 Hb_011709_010 Hb_011709_010 Hb_010193_020--Hb_011709_010 Hb_185608_010 Hb_185608_010 Hb_010193_020--Hb_185608_010 Hb_057862_010 Hb_057862_010 Hb_010193_020--Hb_057862_010 Hb_049955_010 Hb_049955_010 Hb_010193_020--Hb_049955_010 Hb_005269_060 Hb_005269_060 Hb_010193_020--Hb_005269_060 Hb_011344_040--Hb_185608_010 Hb_000227_360 Hb_000227_360 Hb_011344_040--Hb_000227_360 Hb_003858_010 Hb_003858_010 Hb_011344_040--Hb_003858_010 Hb_001357_290 Hb_001357_290 Hb_011344_040--Hb_001357_290 Hb_011344_040--Hb_057862_010 Hb_011709_010--Hb_049955_010 Hb_138585_010 Hb_138585_010 Hb_011709_010--Hb_138585_010 Hb_009252_070 Hb_009252_070 Hb_011709_010--Hb_009252_070 Hb_011709_010--Hb_005269_060 Hb_011709_010--Hb_057862_010 Hb_185608_010--Hb_057862_010 Hb_162450_010 Hb_162450_010 Hb_185608_010--Hb_162450_010 Hb_185608_010--Hb_049955_010 Hb_007382_110 Hb_007382_110 Hb_185608_010--Hb_007382_110 Hb_185608_010--Hb_003858_010 Hb_057862_010--Hb_162450_010 Hb_057862_010--Hb_049955_010 Hb_002740_140 Hb_002740_140 Hb_057862_010--Hb_002740_140 Hb_093084_030 Hb_093084_030 Hb_057862_010--Hb_093084_030 Hb_049955_010--Hb_162450_010 Hb_049955_010--Hb_005269_060 Hb_000343_070 Hb_000343_070 Hb_049955_010--Hb_000343_070 Hb_005532_080 Hb_005532_080 Hb_049955_010--Hb_005532_080 Hb_005269_060--Hb_000343_070 Hb_001278_120 Hb_001278_120 Hb_005269_060--Hb_001278_120 Hb_005269_060--Hb_011344_040 Hb_004943_020 Hb_004943_020 Hb_005269_060--Hb_004943_020 Hb_010172_040 Hb_010172_040 Hb_005269_060--Hb_010172_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.323595 1.78402 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0657773 0.976636

CAGE analysis