Hb_010193_050

Information

Type -
Description -
Location Contig10193: 33533-34421
Sequence    

Annotation

kegg
ID rcu:RCOM_0904030
description hypothetical protein
nr
ID XP_002518465.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RXJ6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0904030 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010193_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000567_010 0.0503919065 - - PREDICTED: uncharacterized protein LOC105631110 [Jatropha curcas]
3 Hb_003124_130 0.0628776668 - - PREDICTED: KH domain-containing protein At4g18375 isoform X1 [Jatropha curcas]
4 Hb_000768_110 0.0635905414 - - PREDICTED: chromo domain-containing protein LHP1 isoform X1 [Jatropha curcas]
5 Hb_003605_130 0.0642730298 - - PREDICTED: probable arabinosyltransferase ARAD1 [Populus euphratica]
6 Hb_000329_130 0.0674886534 - - beta-tubulin cofactor d, putative [Ricinus communis]
7 Hb_000645_120 0.0676898004 - - PREDICTED: ubiquitin-conjugating enzyme E2 32 [Jatropha curcas]
8 Hb_000796_190 0.0678701421 - - hypothetical protein F383_31148 [Gossypium arboreum]
9 Hb_000320_200 0.0679315337 - - PREDICTED: U3 small nucleolar RNA-associated protein 6 homolog [Jatropha curcas]
10 Hb_008864_110 0.0681501334 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
11 Hb_001599_030 0.0682608284 - - PREDICTED: valine--tRNA ligase [Jatropha curcas]
12 Hb_000173_510 0.068279244 - - PREDICTED: AP-5 complex subunit mu [Jatropha curcas]
13 Hb_002823_030 0.0719781789 - - -
14 Hb_000510_310 0.0720699358 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
15 Hb_000283_070 0.0727098319 - - PREDICTED: T-complex protein 1 subunit delta [Jatropha curcas]
16 Hb_002235_160 0.0728993026 - - PREDICTED: SNF1-related protein kinase catalytic subunit alpha KIN10 [Jatropha curcas]
17 Hb_001235_200 0.0731002135 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002174_020 0.0731438153 - - ring finger protein, putative [Ricinus communis]
19 Hb_003680_150 0.0732873036 - - srpk, putative [Ricinus communis]
20 Hb_147737_010 0.073564978 - - PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_010193_050 Hb_010193_050 Hb_000567_010 Hb_000567_010 Hb_010193_050--Hb_000567_010 Hb_003124_130 Hb_003124_130 Hb_010193_050--Hb_003124_130 Hb_000768_110 Hb_000768_110 Hb_010193_050--Hb_000768_110 Hb_003605_130 Hb_003605_130 Hb_010193_050--Hb_003605_130 Hb_000329_130 Hb_000329_130 Hb_010193_050--Hb_000329_130 Hb_000645_120 Hb_000645_120 Hb_010193_050--Hb_000645_120 Hb_000567_010--Hb_003124_130 Hb_005494_020 Hb_005494_020 Hb_000567_010--Hb_005494_020 Hb_147737_010 Hb_147737_010 Hb_000567_010--Hb_147737_010 Hb_000567_010--Hb_000768_110 Hb_000331_190 Hb_000331_190 Hb_000567_010--Hb_000331_190 Hb_000796_190 Hb_000796_190 Hb_003124_130--Hb_000796_190 Hb_003124_130--Hb_147737_010 Hb_001454_320 Hb_001454_320 Hb_003124_130--Hb_001454_320 Hb_000158_130 Hb_000158_130 Hb_003124_130--Hb_000158_130 Hb_000160_290 Hb_000160_290 Hb_003124_130--Hb_000160_290 Hb_008159_020 Hb_008159_020 Hb_000768_110--Hb_008159_020 Hb_000160_040 Hb_000160_040 Hb_000768_110--Hb_000160_040 Hb_005914_060 Hb_005914_060 Hb_000768_110--Hb_005914_060 Hb_000173_510 Hb_000173_510 Hb_000768_110--Hb_000173_510 Hb_000214_040 Hb_000214_040 Hb_003605_130--Hb_000214_040 Hb_008864_110 Hb_008864_110 Hb_003605_130--Hb_008864_110 Hb_000933_020 Hb_000933_020 Hb_003605_130--Hb_000933_020 Hb_002823_030 Hb_002823_030 Hb_003605_130--Hb_002823_030 Hb_001140_350 Hb_001140_350 Hb_003605_130--Hb_001140_350 Hb_000329_130--Hb_147737_010 Hb_017895_020 Hb_017895_020 Hb_000329_130--Hb_017895_020 Hb_010315_090 Hb_010315_090 Hb_000329_130--Hb_010315_090 Hb_140049_020 Hb_140049_020 Hb_000329_130--Hb_140049_020 Hb_007558_120 Hb_007558_120 Hb_000329_130--Hb_007558_120 Hb_009151_020 Hb_009151_020 Hb_000329_130--Hb_009151_020 Hb_000283_070 Hb_000283_070 Hb_000645_120--Hb_000283_070 Hb_000645_120--Hb_001140_350 Hb_000645_120--Hb_008864_110 Hb_005321_020 Hb_005321_020 Hb_000645_120--Hb_005321_020 Hb_000510_310 Hb_000510_310 Hb_000645_120--Hb_000510_310 Hb_000645_120--Hb_003124_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.7731 25.6918 16.538 16.9281 35.3771 44.7457
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.7588 18.0697 17.088 20.6989 15.3645

CAGE analysis