Hb_010222_020

Information

Type -
Description -
Location Contig10222: 22875-25613
Sequence    

Annotation

kegg
ID rcu:RCOM_1428920
description hypothetical protein
nr
ID XP_012089197.1
description PREDICTED: uncharacterized protein LOC105647642 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JVQ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23447 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01030: 22931-25629 , PASA_asmbl_01033: 26446-27108
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010222_020 0.0 - - PREDICTED: uncharacterized protein LOC105647642 [Jatropha curcas]
2 Hb_004195_270 0.0685991078 - - Ubiquitin-conjugating enzyme 16 [Theobroma cacao]
3 Hb_000815_320 0.0748642225 - - PREDICTED: vesicle transport v-SNARE 12-like isoform X2 [Jatropha curcas]
4 Hb_009694_010 0.0759152732 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004096_090 0.076415674 - - Plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative [Ricinus communis]
6 Hb_001195_480 0.0765471329 - - cop9 complex subunit, putative [Ricinus communis]
7 Hb_000053_110 0.07676549 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002490_020 0.0775363092 - - peptidyl-tRNA hydrolase family protein [Populus trichocarpa]
9 Hb_001157_020 0.0784766964 - - PREDICTED: uncharacterized protein LOC105649844 isoform X1 [Jatropha curcas]
10 Hb_000656_240 0.0788424146 - - proteasome subunit alpha type, putative [Ricinus communis]
11 Hb_000416_040 0.078854858 transcription factor TF Family: HSF Heat shock factor protein, putative [Ricinus communis]
12 Hb_001662_070 0.0792203407 - - PREDICTED: thiol-disulfide oxidoreductase LTO1 [Jatropha curcas]
13 Hb_000465_090 0.0802373114 - - PREDICTED: uncharacterized protein LOC105632289 [Jatropha curcas]
14 Hb_000362_200 0.0811784726 - - exonuclease family protein [Populus trichocarpa]
15 Hb_001821_010 0.0836141907 - - PREDICTED: uncharacterized protein C9orf78 [Jatropha curcas]
16 Hb_006059_050 0.0838368781 - - PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]
17 Hb_002235_250 0.0840983048 - - PREDICTED: cystathionine gamma-synthase 1, chloroplastic [Jatropha curcas]
18 Hb_002141_030 0.0850324293 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000329_320 0.0853402894 - - PREDICTED: DNA ligase 1 [Jatropha curcas]
20 Hb_005697_060 0.0861888556 transcription factor TF Family: HB PREDICTED: pathogenesis-related homeodomain protein isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_010222_020 Hb_010222_020 Hb_004195_270 Hb_004195_270 Hb_010222_020--Hb_004195_270 Hb_000815_320 Hb_000815_320 Hb_010222_020--Hb_000815_320 Hb_009694_010 Hb_009694_010 Hb_010222_020--Hb_009694_010 Hb_004096_090 Hb_004096_090 Hb_010222_020--Hb_004096_090 Hb_001195_480 Hb_001195_480 Hb_010222_020--Hb_001195_480 Hb_000053_110 Hb_000053_110 Hb_010222_020--Hb_000053_110 Hb_000205_090 Hb_000205_090 Hb_004195_270--Hb_000205_090 Hb_118419_010 Hb_118419_010 Hb_004195_270--Hb_118419_010 Hb_000787_050 Hb_000787_050 Hb_004195_270--Hb_000787_050 Hb_002490_020 Hb_002490_020 Hb_004195_270--Hb_002490_020 Hb_001268_420 Hb_001268_420 Hb_004195_270--Hb_001268_420 Hb_001821_010 Hb_001821_010 Hb_000815_320--Hb_001821_010 Hb_001662_070 Hb_001662_070 Hb_000815_320--Hb_001662_070 Hb_000815_320--Hb_001195_480 Hb_000580_090 Hb_000580_090 Hb_000815_320--Hb_000580_090 Hb_004116_190 Hb_004116_190 Hb_000815_320--Hb_004116_190 Hb_005054_060 Hb_005054_060 Hb_000815_320--Hb_005054_060 Hb_028227_020 Hb_028227_020 Hb_009694_010--Hb_028227_020 Hb_000465_090 Hb_000465_090 Hb_009694_010--Hb_000465_090 Hb_009694_010--Hb_004096_090 Hb_001157_020 Hb_001157_020 Hb_009694_010--Hb_001157_020 Hb_007632_030 Hb_007632_030 Hb_009694_010--Hb_007632_030 Hb_005697_060 Hb_005697_060 Hb_009694_010--Hb_005697_060 Hb_004096_090--Hb_001195_480 Hb_004116_060 Hb_004116_060 Hb_004096_090--Hb_004116_060 Hb_004096_090--Hb_005054_060 Hb_000633_020 Hb_000633_020 Hb_004096_090--Hb_000633_020 Hb_001534_120 Hb_001534_120 Hb_001195_480--Hb_001534_120 Hb_000656_240 Hb_000656_240 Hb_001195_480--Hb_000656_240 Hb_000529_030 Hb_000529_030 Hb_001195_480--Hb_000529_030 Hb_004453_170 Hb_004453_170 Hb_001195_480--Hb_004453_170 Hb_000866_010 Hb_000866_010 Hb_000053_110--Hb_000866_010 Hb_004970_190 Hb_004970_190 Hb_000053_110--Hb_004970_190 Hb_012395_230 Hb_012395_230 Hb_000053_110--Hb_012395_230 Hb_005271_220 Hb_005271_220 Hb_000053_110--Hb_005271_220 Hb_000261_020 Hb_000261_020 Hb_000053_110--Hb_000261_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.7477 4.24346 8.68972 5.98123 5.92452 8.56252
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.952 13.2464 8.19135 4.66137 6.75092

CAGE analysis