Hb_010222_030

Information

Type -
Description -
Location Contig10222: 26073-28454
Sequence    

Annotation

kegg
ID pop:POPTR_0005s04780g
description hypothetical protein
nr
ID XP_012089196.1
description PREDICTED: uncharacterized protein LOC105647641 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JL98
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23446 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01032: 26015-28191
cDNA
(Sanger)
(ID:Location)		 046_L15.ab1: 26029-27180

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010222_030 0.0 - - PREDICTED: uncharacterized protein LOC105647641 [Jatropha curcas]
2 Hb_024714_020 0.0643454699 - - WD-repeat protein, putative [Ricinus communis]
3 Hb_001863_110 0.0749742752 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
4 Hb_000034_050 0.0763810111 - - PREDICTED: uncharacterized protein LOC105637912 [Jatropha curcas]
5 Hb_000230_330 0.0780058665 - - PREDICTED: calcium-binding protein 39-like [Populus euphratica]
6 Hb_010222_080 0.0781321202 - - PREDICTED: pentatricopeptide repeat-containing protein At2g06000 [Jatropha curcas]
7 Hb_001584_290 0.0817166537 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
8 Hb_002007_250 0.0836672481 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000390_060 0.0877465669 - - PREDICTED: F-box/kelch-repeat protein At5g60570-like [Jatropha curcas]
10 Hb_001584_110 0.0884466502 - - PREDICTED: importin subunit alpha-4 isoform X2 [Jatropha curcas]
11 Hb_004198_010 0.0885935733 - - Eukaryotic translation initiation factor 2 subunit beta [Theobroma cacao]
12 Hb_011282_030 0.0891237221 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH8 isoform X1 [Jatropha curcas]
13 Hb_000076_080 0.0909026492 - - PREDICTED: protein MOS2 [Jatropha curcas]
14 Hb_001504_160 0.0913803455 - - PREDICTED: nuclear pore complex protein NUP96 [Jatropha curcas]
15 Hb_004044_020 0.0920396485 - - PREDICTED: nudix hydrolase 19, chloroplastic [Jatropha curcas]
16 Hb_003434_060 0.0924380328 - - PREDICTED: membrane-bound transcription factor site-2 protease homolog isoform X1 [Jatropha curcas]
17 Hb_002400_180 0.0926881582 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005662_030 0.0938329844 - - protein with unknown function [Ricinus communis]
19 Hb_000184_110 0.0940228913 - - hypothetical protein F383_18769 [Gossypium arboreum]
20 Hb_000943_070 0.095124441 - - PREDICTED: uncharacterized protein LOC105635592 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_010222_030 Hb_010222_030 Hb_024714_020 Hb_024714_020 Hb_010222_030--Hb_024714_020 Hb_001863_110 Hb_001863_110 Hb_010222_030--Hb_001863_110 Hb_000034_050 Hb_000034_050 Hb_010222_030--Hb_000034_050 Hb_000230_330 Hb_000230_330 Hb_010222_030--Hb_000230_330 Hb_010222_080 Hb_010222_080 Hb_010222_030--Hb_010222_080 Hb_001584_290 Hb_001584_290 Hb_010222_030--Hb_001584_290 Hb_009411_020 Hb_009411_020 Hb_024714_020--Hb_009411_020 Hb_000462_150 Hb_000462_150 Hb_024714_020--Hb_000462_150 Hb_003006_060 Hb_003006_060 Hb_024714_020--Hb_003006_060 Hb_185467_010 Hb_185467_010 Hb_024714_020--Hb_185467_010 Hb_024714_020--Hb_000230_330 Hb_001863_110--Hb_000034_050 Hb_000335_010 Hb_000335_010 Hb_001863_110--Hb_000335_010 Hb_003581_120 Hb_003581_120 Hb_001863_110--Hb_003581_120 Hb_002400_180 Hb_002400_180 Hb_001863_110--Hb_002400_180 Hb_002174_060 Hb_002174_060 Hb_001863_110--Hb_002174_060 Hb_000034_050--Hb_002400_180 Hb_000322_100 Hb_000322_100 Hb_000034_050--Hb_000322_100 Hb_009265_080 Hb_009265_080 Hb_000034_050--Hb_009265_080 Hb_000034_050--Hb_003581_120 Hb_000390_060 Hb_000390_060 Hb_000034_050--Hb_000390_060 Hb_001584_110 Hb_001584_110 Hb_000230_330--Hb_001584_110 Hb_000230_330--Hb_000390_060 Hb_001504_160 Hb_001504_160 Hb_000230_330--Hb_001504_160 Hb_000230_330--Hb_000462_150 Hb_003434_060 Hb_003434_060 Hb_000230_330--Hb_003434_060 Hb_000076_080 Hb_000076_080 Hb_000230_330--Hb_000076_080 Hb_010222_080--Hb_001584_290 Hb_002942_220 Hb_002942_220 Hb_010222_080--Hb_002942_220 Hb_017168_010 Hb_017168_010 Hb_010222_080--Hb_017168_010 Hb_000139_250 Hb_000139_250 Hb_010222_080--Hb_000139_250 Hb_004678_020 Hb_004678_020 Hb_010222_080--Hb_004678_020 Hb_004162_280 Hb_004162_280 Hb_010222_080--Hb_004162_280 Hb_008143_030 Hb_008143_030 Hb_001584_290--Hb_008143_030 Hb_000104_080 Hb_000104_080 Hb_001584_290--Hb_000104_080 Hb_002587_020 Hb_002587_020 Hb_001584_290--Hb_002587_020 Hb_000923_040 Hb_000923_040 Hb_001584_290--Hb_000923_040 Hb_000640_220 Hb_000640_220 Hb_001584_290--Hb_000640_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.4868 8.5177 5.76928 11.4795 34.6842 33.8403
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.8617 15.4188 16.3922 9.07743 7.38987

CAGE analysis