Hb_010222_050

Information

Type -
Description -
Location Contig10222: 39271-51833
Sequence    

Annotation

kegg
ID rcu:RCOM_1429050
description nucleotide binding protein, putative (EC:2.7.11.7)
nr
ID XP_012089194.1
description PREDICTED: WD repeat-containing protein 48 isoform X2 [Jatropha curcas]
swissprot
ID Q5F3K4
description WD repeat-containing protein 48 OS=Gallus gallus GN=WDR48 PE=2 SV=1
trembl
ID A0A067JI36
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23444 PE=4 SV=1
Gene Ontology
ID GO:0005515
description wd repeat-containing protein 48-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01041: 48244-48752
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010222_050 0.0 - - PREDICTED: WD repeat-containing protein 48 isoform X2 [Jatropha curcas]
2 Hb_005731_030 0.0401705706 - - PREDICTED: UPF0400 protein C337.03 [Jatropha curcas]
3 Hb_003029_110 0.0606929216 - - PREDICTED: uncharacterized protein LOC105640062 isoform X1 [Jatropha curcas]
4 Hb_000060_090 0.06378072 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-4a [Jatropha curcas]
5 Hb_000152_380 0.0645527712 - - PREDICTED: hypersensitive-induced response protein 4 [Jatropha curcas]
6 Hb_000502_050 0.064778102 transcription factor TF Family: HSF Heat shock factor protein HSF8, putative [Ricinus communis]
7 Hb_002823_030 0.0659866647 - - -
8 Hb_003371_110 0.0670795176 - - PREDICTED: protein EMSY-LIKE 3 [Jatropha curcas]
9 Hb_002518_280 0.0677917049 - - phosphate transporter [Manihot esculenta]
10 Hb_010618_010 0.0700477185 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
11 Hb_008643_210 0.0716428296 - - PREDICTED: uncharacterized protein LOC105644223 isoform X1 [Jatropha curcas]
12 Hb_008159_020 0.0716602791 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
13 Hb_001248_060 0.0717945965 - - conserved hypothetical protein [Ricinus communis]
14 Hb_016172_020 0.0721013368 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18390, mitochondrial-like [Jatropha curcas]
15 Hb_000166_130 0.0730904307 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004310_150 0.073809239 - - PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein [Vitis vinifera]
17 Hb_007576_110 0.0749914575 - - Endoplasmic reticulum vesicle transporter protein [Theobroma cacao]
18 Hb_014361_070 0.0754262044 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
19 Hb_006882_020 0.0757526764 - - conserved hypothetical protein [Ricinus communis]
20 Hb_123352_020 0.0757706999 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560 [Jatropha curcas]

Gene co-expression network

sample Hb_010222_050 Hb_010222_050 Hb_005731_030 Hb_005731_030 Hb_010222_050--Hb_005731_030 Hb_003029_110 Hb_003029_110 Hb_010222_050--Hb_003029_110 Hb_000060_090 Hb_000060_090 Hb_010222_050--Hb_000060_090 Hb_000152_380 Hb_000152_380 Hb_010222_050--Hb_000152_380 Hb_000502_050 Hb_000502_050 Hb_010222_050--Hb_000502_050 Hb_002823_030 Hb_002823_030 Hb_010222_050--Hb_002823_030 Hb_005731_030--Hb_003029_110 Hb_123352_020 Hb_123352_020 Hb_005731_030--Hb_123352_020 Hb_000820_170 Hb_000820_170 Hb_005731_030--Hb_000820_170 Hb_002518_280 Hb_002518_280 Hb_005731_030--Hb_002518_280 Hb_010618_010 Hb_010618_010 Hb_005731_030--Hb_010618_010 Hb_000166_130 Hb_000166_130 Hb_003029_110--Hb_000166_130 Hb_001195_320 Hb_001195_320 Hb_003029_110--Hb_001195_320 Hb_000343_120 Hb_000343_120 Hb_003029_110--Hb_000343_120 Hb_003371_110 Hb_003371_110 Hb_003029_110--Hb_003371_110 Hb_013399_100 Hb_013399_100 Hb_000060_090--Hb_013399_100 Hb_001409_020 Hb_001409_020 Hb_000060_090--Hb_001409_020 Hb_000029_300 Hb_000029_300 Hb_000060_090--Hb_000029_300 Hb_105105_020 Hb_105105_020 Hb_000060_090--Hb_105105_020 Hb_008643_210 Hb_008643_210 Hb_000060_090--Hb_008643_210 Hb_000152_380--Hb_002518_280 Hb_004310_150 Hb_004310_150 Hb_000152_380--Hb_004310_150 Hb_000780_230 Hb_000780_230 Hb_000152_380--Hb_000780_230 Hb_000152_380--Hb_010618_010 Hb_001248_060 Hb_001248_060 Hb_000152_380--Hb_001248_060 Hb_004221_020 Hb_004221_020 Hb_000152_380--Hb_004221_020 Hb_003785_040 Hb_003785_040 Hb_000502_050--Hb_003785_040 Hb_009411_010 Hb_009411_010 Hb_000502_050--Hb_009411_010 Hb_005993_050 Hb_005993_050 Hb_000502_050--Hb_005993_050 Hb_000574_440 Hb_000574_440 Hb_000502_050--Hb_000574_440 Hb_009503_030 Hb_009503_030 Hb_000502_050--Hb_009503_030 Hb_003680_150 Hb_003680_150 Hb_002823_030--Hb_003680_150 Hb_000190_120 Hb_000190_120 Hb_002823_030--Hb_000190_120 Hb_002823_030--Hb_003371_110 Hb_002835_230 Hb_002835_230 Hb_002823_030--Hb_002835_230 Hb_014361_070 Hb_014361_070 Hb_002823_030--Hb_014361_070 Hb_003018_130 Hb_003018_130 Hb_002823_030--Hb_003018_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.487 18.7802 11.8044 12.6597 21.8491 26.9289
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.293 16.7652 15.3993 11.4309 12.0157

CAGE analysis