Hb_010222_060

Information

Type -
Description -
Location Contig10222: 55570-65974
Sequence    

Annotation

kegg
ID rcu:RCOM_1429060
description catalytic, putative
nr
ID XP_012089189.1
description PREDICTED: acyltransferase-like protein At1g54570, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID Q9ZVN2
description Acyltransferase-like protein At1g54570, chloroplastic OS=Arabidopsis thaliana GN=At1g54570 PE=2 SV=1
trembl
ID A0A067JUE6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23443 PE=4 SV=1
Gene Ontology
ID GO:0016747
description acyltransferase-like protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01043: 54878-64604 , PASA_asmbl_01045: 63148-63921 , PASA_asmbl_01046: 62597-62717 , PASA_asmbl_01048: 56118-57099 , PASA_asmbl_01049: 65332-65835
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010222_060 0.0 - - PREDICTED: acyltransferase-like protein At1g54570, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_013394_120 0.0529954366 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
3 Hb_014700_030 0.0607024585 - - tryptophan synthase beta chain, putative [Ricinus communis]
4 Hb_001789_120 0.0616302494 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Jatropha curcas]
5 Hb_009522_020 0.0619680862 - - PREDICTED: protein ECERIFERUM 3 [Jatropha curcas]
6 Hb_132840_170 0.065980458 transcription factor TF Family: NAC Transcription factor [Theobroma cacao]
7 Hb_002713_060 0.0836692678 - - PREDICTED: protein NRT1/ PTR FAMILY 6.4 [Jatropha curcas]
8 Hb_173387_010 0.0838823505 - - hypothetical protein POPTR_0017s13190g, partial [Populus trichocarpa]
9 Hb_004880_050 0.085215254 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000818_090 0.0909541926 - - glutamate receptor 3 plant, putative [Ricinus communis]
11 Hb_000120_480 0.094279154 - - -
12 Hb_001296_060 0.1009310822 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
13 Hb_005051_010 0.1023348854 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
14 Hb_031862_120 0.1060225071 - - PREDICTED: root phototropism protein 3 [Jatropha curcas]
15 Hb_032779_010 0.1084254613 - - unnamed protein product [Vitis vinifera]
16 Hb_005057_030 0.1088187381 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
17 Hb_001417_060 0.1090917947 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
18 Hb_162676_010 0.1097163647 - - ATP binding protein, putative [Ricinus communis]
19 Hb_000815_090 0.1097770936 - - PREDICTED: uncharacterized protein LOC105630464 isoform X1 [Jatropha curcas]
20 Hb_000395_230 0.1106723407 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Vitis vinifera]

Gene co-expression network

sample Hb_010222_060 Hb_010222_060 Hb_013394_120 Hb_013394_120 Hb_010222_060--Hb_013394_120 Hb_014700_030 Hb_014700_030 Hb_010222_060--Hb_014700_030 Hb_001789_120 Hb_001789_120 Hb_010222_060--Hb_001789_120 Hb_009522_020 Hb_009522_020 Hb_010222_060--Hb_009522_020 Hb_132840_170 Hb_132840_170 Hb_010222_060--Hb_132840_170 Hb_002713_060 Hb_002713_060 Hb_010222_060--Hb_002713_060 Hb_013394_120--Hb_001789_120 Hb_013394_120--Hb_132840_170 Hb_000818_090 Hb_000818_090 Hb_013394_120--Hb_000818_090 Hb_013394_120--Hb_009522_020 Hb_013394_120--Hb_014700_030 Hb_014700_030--Hb_001789_120 Hb_004880_050 Hb_004880_050 Hb_014700_030--Hb_004880_050 Hb_032779_010 Hb_032779_010 Hb_014700_030--Hb_032779_010 Hb_014700_030--Hb_132840_170 Hb_001789_120--Hb_000818_090 Hb_001789_120--Hb_004880_050 Hb_001789_120--Hb_132840_170 Hb_173387_010 Hb_173387_010 Hb_009522_020--Hb_173387_010 Hb_001206_100 Hb_001206_100 Hb_009522_020--Hb_001206_100 Hb_005183_100 Hb_005183_100 Hb_009522_020--Hb_005183_100 Hb_001296_060 Hb_001296_060 Hb_009522_020--Hb_001296_060 Hb_132840_170--Hb_173387_010 Hb_000815_090 Hb_000815_090 Hb_132840_170--Hb_000815_090 Hb_132840_170--Hb_009522_020 Hb_005057_030 Hb_005057_030 Hb_002713_060--Hb_005057_030 Hb_002713_060--Hb_173387_010 Hb_002636_070 Hb_002636_070 Hb_002713_060--Hb_002636_070 Hb_000120_480 Hb_000120_480 Hb_002713_060--Hb_000120_480 Hb_002713_060--Hb_009522_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.269119 40.1169 50.0364 73.2046 0.0997491 0.655826
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.189037 0.049585 0 8.60827 109.362

CAGE analysis