Hb_010253_020

Information

Type -
Description -
Location Contig10253: 32901-35179
Sequence    

Annotation

kegg
ID rcu:RCOM_0605880
description alcohol dehydrogenase, putative (EC:1.3.1.74)
nr
ID XP_002529813.1
description alcohol dehydrogenase, putative [Ricinus communis]
swissprot
ID Q39173
description NADP-dependent alkenal double bond reductase P2 OS=Arabidopsis thaliana GN=P2 PE=2 SV=2
trembl
ID B9SUZ4
description Alcohol dehydrogenase, putative OS=Ricinus communis GN=RCOM_0605880 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01098: 32945-35336
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010253_020 0.0 - - alcohol dehydrogenase, putative [Ricinus communis]
2 Hb_000778_020 0.109512018 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
3 Hb_000083_130 0.1320902786 - - hypothetical protein RCOM_0884570 [Ricinus communis]
4 Hb_000189_120 0.1327565595 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like isoform X5 [Jatropha curcas]
5 Hb_057079_020 0.1329142348 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001071_060 0.1464854832 - - Trehalose phosphatase/synthase 5 isoform 1 [Theobroma cacao]
7 Hb_002928_120 0.1469280087 - - 1,4-alpha-glucan branching enzyme [Manihot esculenta]
8 Hb_000236_110 0.151942269 - - PREDICTED: chaperone protein dnaJ 20, chloroplastic [Jatropha curcas]
9 Hb_001148_040 0.1548965274 - - hypothetical protein JCGZ_07831 [Jatropha curcas]
10 Hb_001832_210 0.158039661 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
11 Hb_000025_400 0.1588347196 - - PREDICTED: uncharacterized protein LOC105110770 [Populus euphratica]
12 Hb_008175_030 0.1591061765 transcription factor TF Family: TAZ PREDICTED: BTB/POZ and TAZ domain-containing protein 3 [Jatropha curcas]
13 Hb_000589_220 0.1600352289 desease resistance Gene Name: NB-ARC PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
14 Hb_002739_060 0.1616222387 - - -
15 Hb_000007_160 0.1616328301 - - hypothetical protein POPTR_0008s10970g [Populus trichocarpa]
16 Hb_001625_010 0.1634705205 - - PREDICTED: glyoxylate/hydroxypyruvate reductase HPR3-like [Jatropha curcas]
17 Hb_004531_110 0.1655471931 - - PREDICTED: aquaporin TIP2-1 [Jatropha curcas]
18 Hb_003894_100 0.1662763839 - - PREDICTED: AT-hook motif nuclear-localized protein 1-like [Jatropha curcas]
19 Hb_005880_010 0.1664382806 - - PREDICTED: uncharacterized protein LOC105646431 [Jatropha curcas]
20 Hb_000197_230 0.1675791812 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_010253_020 Hb_010253_020 Hb_000778_020 Hb_000778_020 Hb_010253_020--Hb_000778_020 Hb_000083_130 Hb_000083_130 Hb_010253_020--Hb_000083_130 Hb_000189_120 Hb_000189_120 Hb_010253_020--Hb_000189_120 Hb_057079_020 Hb_057079_020 Hb_010253_020--Hb_057079_020 Hb_001071_060 Hb_001071_060 Hb_010253_020--Hb_001071_060 Hb_002928_120 Hb_002928_120 Hb_010253_020--Hb_002928_120 Hb_008175_030 Hb_008175_030 Hb_000778_020--Hb_008175_030 Hb_000778_020--Hb_057079_020 Hb_002928_180 Hb_002928_180 Hb_000778_020--Hb_002928_180 Hb_001408_150 Hb_001408_150 Hb_000778_020--Hb_001408_150 Hb_000778_020--Hb_000189_120 Hb_001625_010 Hb_001625_010 Hb_000083_130--Hb_001625_010 Hb_001900_060 Hb_001900_060 Hb_000083_130--Hb_001900_060 Hb_159411_010 Hb_159411_010 Hb_000083_130--Hb_159411_010 Hb_000083_130--Hb_000778_020 Hb_000413_230 Hb_000413_230 Hb_000083_130--Hb_000413_230 Hb_001584_010 Hb_001584_010 Hb_000189_120--Hb_001584_010 Hb_000189_120--Hb_008175_030 Hb_000189_120--Hb_057079_020 Hb_000007_160 Hb_000007_160 Hb_000189_120--Hb_000007_160 Hb_001410_010 Hb_001410_010 Hb_057079_020--Hb_001410_010 Hb_013749_060 Hb_013749_060 Hb_057079_020--Hb_013749_060 Hb_011310_200 Hb_011310_200 Hb_057079_020--Hb_011310_200 Hb_057079_020--Hb_008175_030 Hb_001832_210 Hb_001832_210 Hb_001071_060--Hb_001832_210 Hb_000197_230 Hb_000197_230 Hb_001071_060--Hb_000197_230 Hb_004531_110 Hb_004531_110 Hb_001071_060--Hb_004531_110 Hb_064047_010 Hb_064047_010 Hb_001071_060--Hb_064047_010 Hb_001071_060--Hb_000778_020 Hb_002324_040 Hb_002324_040 Hb_001071_060--Hb_002324_040 Hb_000793_040 Hb_000793_040 Hb_002928_120--Hb_000793_040 Hb_002928_120--Hb_002928_180 Hb_001021_030 Hb_001021_030 Hb_002928_120--Hb_001021_030 Hb_025432_010 Hb_025432_010 Hb_002928_120--Hb_025432_010 Hb_000429_110 Hb_000429_110 Hb_002928_120--Hb_000429_110 Hb_000236_110 Hb_000236_110 Hb_002928_120--Hb_000236_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
90.7886 481.859 47.134 310.268 43.9453 41.1012
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.4464 3.79217 1.81948 369.555 122.063

CAGE analysis