Hb_010254_020

Information

Type -
Description -
Location Contig10254: 17489-20062
Sequence    

Annotation

kegg
ID pop:POPTR_0006s28640g
description POPTRDRAFT_562056; NBS-LRR resistance protein RGH2
nr
ID AAO37645.1
description NBS-LRR resistance protein RGH1 [Manihot esculenta]
swissprot
ID Q7XA39
description Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1
trembl
ID Q84XG0
description NBS-LRR resistance protein RGH1 OS=Manihot esculenta PE=4 SV=1
Gene Ontology
ID GO:0005515
description nbs-lrr resistance protein rgh2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01103: 8746-18661
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010254_020 0.0 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
2 Hb_009119_030 0.1551648381 - - GMFP4 [Medicago truncatula]
3 Hb_000027_030 0.1710572676 - - Uncharacterized protein isoform 1 [Theobroma cacao]
4 Hb_020805_010 0.1794026442 - - protein with unknown function [Ricinus communis]
5 Hb_000130_190 0.1827777038 - - PREDICTED: uncharacterized protein LOC105638437 [Jatropha curcas]
6 Hb_003043_060 0.1835869203 - - -
7 Hb_141132_010 0.1898345139 - - Hsc70-interacting protein, putative [Ricinus communis]
8 Hb_000366_190 0.1925068726 - - Phosphoenolpyruvate carboxylase, putative [Ricinus communis]
9 Hb_000749_110 0.1931293278 - - PREDICTED: choline transporter-like protein 2 [Jatropha curcas]
10 Hb_001901_080 0.1945939456 - - PREDICTED: xylose isomerase [Jatropha curcas]
11 Hb_001390_010 0.1946953019 - - PREDICTED: uncharacterized protein LOC105635994 [Jatropha curcas]
12 Hb_009119_040 0.1949134913 - - PREDICTED: tobamovirus multiplication protein 2A [Jatropha curcas]
13 Hb_000264_010 0.195522692 - - PREDICTED: uncharacterized protein LOC105649505 [Jatropha curcas]
14 Hb_000001_160 0.1961028763 - - PREDICTED: probable glutamate carboxypeptidase 2 isoform X2 [Jatropha curcas]
15 Hb_027420_050 0.1976725518 - - -
16 Hb_001031_040 0.1983437339 - - conserved hypothetical protein [Ricinus communis]
17 Hb_007044_230 0.1994007223 - - PREDICTED: uncharacterized protein LOC105638702 [Jatropha curcas]
18 Hb_001504_090 0.2001728665 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
19 Hb_000108_080 0.2013940557 - - PREDICTED: importin-5 [Jatropha curcas]
20 Hb_002070_070 0.2014659421 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_010254_020 Hb_010254_020 Hb_009119_030 Hb_009119_030 Hb_010254_020--Hb_009119_030 Hb_000027_030 Hb_000027_030 Hb_010254_020--Hb_000027_030 Hb_020805_010 Hb_020805_010 Hb_010254_020--Hb_020805_010 Hb_000130_190 Hb_000130_190 Hb_010254_020--Hb_000130_190 Hb_003043_060 Hb_003043_060 Hb_010254_020--Hb_003043_060 Hb_141132_010 Hb_141132_010 Hb_010254_020--Hb_141132_010 Hb_002320_070 Hb_002320_070 Hb_009119_030--Hb_002320_070 Hb_002411_130 Hb_002411_130 Hb_009119_030--Hb_002411_130 Hb_009119_030--Hb_000130_190 Hb_000159_110 Hb_000159_110 Hb_009119_030--Hb_000159_110 Hb_001901_080 Hb_001901_080 Hb_009119_030--Hb_001901_080 Hb_121467_010 Hb_121467_010 Hb_009119_030--Hb_121467_010 Hb_001675_070 Hb_001675_070 Hb_000027_030--Hb_001675_070 Hb_022250_110 Hb_022250_110 Hb_000027_030--Hb_022250_110 Hb_000213_070 Hb_000213_070 Hb_000027_030--Hb_000213_070 Hb_001976_090 Hb_001976_090 Hb_000027_030--Hb_001976_090 Hb_000108_080 Hb_000108_080 Hb_000027_030--Hb_000108_080 Hb_000209_070 Hb_000209_070 Hb_000027_030--Hb_000209_070 Hb_000755_080 Hb_000755_080 Hb_020805_010--Hb_000755_080 Hb_000264_010 Hb_000264_010 Hb_020805_010--Hb_000264_010 Hb_000720_070 Hb_000720_070 Hb_020805_010--Hb_000720_070 Hb_000261_520 Hb_000261_520 Hb_020805_010--Hb_000261_520 Hb_027420_050 Hb_027420_050 Hb_020805_010--Hb_027420_050 Hb_000375_030 Hb_000375_030 Hb_020805_010--Hb_000375_030 Hb_028707_080 Hb_028707_080 Hb_000130_190--Hb_028707_080 Hb_004935_080 Hb_004935_080 Hb_000130_190--Hb_004935_080 Hb_000130_190--Hb_002320_070 Hb_008029_020 Hb_008029_020 Hb_000130_190--Hb_008029_020 Hb_019053_020 Hb_019053_020 Hb_000130_190--Hb_019053_020 Hb_000001_160 Hb_000001_160 Hb_003043_060--Hb_000001_160 Hb_003043_060--Hb_001901_080 Hb_120662_010 Hb_120662_010 Hb_003043_060--Hb_120662_010 Hb_000613_100 Hb_000613_100 Hb_003043_060--Hb_000613_100 Hb_003043_060--Hb_027420_050 Hb_003243_020 Hb_003243_020 Hb_003043_060--Hb_003243_020 Hb_003683_180 Hb_003683_180 Hb_141132_010--Hb_003683_180 Hb_002498_050 Hb_002498_050 Hb_141132_010--Hb_002498_050 Hb_000212_320 Hb_000212_320 Hb_141132_010--Hb_000212_320 Hb_009119_040 Hb_009119_040 Hb_141132_010--Hb_009119_040 Hb_141132_010--Hb_028707_080 Hb_141132_010--Hb_000130_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.31145 1.99319 0.212819 3.61398 6.99388 6.20165
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.820513 0.645527 0.449594 1.65046 1.45193

CAGE analysis