Hb_010261_010

Information

Type -
Description -
Location Contig10261: 33370-35610
Sequence    

Annotation

kegg
ID rcu:RCOM_1027650
description hypothetical protein
nr
ID XP_012077615.1
description PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Jatropha curcas]
swissprot
ID Q9LEV3
description CBS domain-containing protein CBSX3, mitochondrial OS=Arabidopsis thaliana GN=CBSX3 PE=1 SV=1
trembl
ID A0A067LB12
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17263 PE=4 SV=1
Gene Ontology
ID GO:0009628
description cbs domain-containing protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01106: 33380-36190
cDNA
(Sanger)
(ID:Location)		 013_M20.ab1: 33706-36185

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010261_010 0.0 - - PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Jatropha curcas]
2 Hb_003096_040 0.1546122792 transcription factor TF Family: HB hypothetical protein POPTR_0005s07290g [Populus trichocarpa]
3 Hb_003633_140 0.1625996877 - - PREDICTED: uncharacterized protein LOC105647486 isoform X1 [Jatropha curcas]
4 Hb_003525_020 0.1639445948 - - conserved hypothetical protein [Ricinus communis]
5 Hb_012404_040 0.1722891572 - - PREDICTED: 1,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic [Jatropha curcas]
6 Hb_000538_190 0.1795886383 - - PREDICTED: protein DJ-1 homolog D [Jatropha curcas]
7 Hb_001269_040 0.1893475577 - - ABC transporter family protein [Hevea brasiliensis]
8 Hb_002316_050 0.1948750392 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001907_100 0.1993309561 - - PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]
10 Hb_003107_020 0.2002169084 - - hypothetical protein JCGZ_18656 [Jatropha curcas]
11 Hb_000640_150 0.2023656442 transcription factor TF Family: WRKY conserved hypothetical protein [Ricinus communis]
12 Hb_015388_030 0.2025795415 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_028795_010 0.2047821202 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]
14 Hb_000181_440 0.2056565175 - - -
15 Hb_002609_090 0.2083212168 - - PREDICTED: phosphomethylpyrimidine synthase, chloroplastic isoform X2 [Jatropha curcas]
16 Hb_004724_130 0.2088522813 - - PREDICTED: glucan endo-1,3-beta-glucosidase 14 [Jatropha curcas]
17 Hb_001369_770 0.2096674206 - - PREDICTED: AT-hook motif nuclear-localized protein 6-like [Jatropha curcas]
18 Hb_181975_010 0.2111734067 - - PREDICTED: probable disease resistance protein At4g27220 [Populus euphratica]
19 Hb_002027_380 0.212082446 - - PREDICTED: secoisolariciresinol dehydrogenase isoform X2 [Jatropha curcas]
20 Hb_004976_060 0.2125534571 - - -

Gene co-expression network

sample Hb_010261_010 Hb_010261_010 Hb_003096_040 Hb_003096_040 Hb_010261_010--Hb_003096_040 Hb_003633_140 Hb_003633_140 Hb_010261_010--Hb_003633_140 Hb_003525_020 Hb_003525_020 Hb_010261_010--Hb_003525_020 Hb_012404_040 Hb_012404_040 Hb_010261_010--Hb_012404_040 Hb_000538_190 Hb_000538_190 Hb_010261_010--Hb_000538_190 Hb_001269_040 Hb_001269_040 Hb_010261_010--Hb_001269_040 Hb_031527_070 Hb_031527_070 Hb_003096_040--Hb_031527_070 Hb_153161_010 Hb_153161_010 Hb_003096_040--Hb_153161_010 Hb_000175_350 Hb_000175_350 Hb_003096_040--Hb_000175_350 Hb_178127_010 Hb_178127_010 Hb_003096_040--Hb_178127_010 Hb_005510_010 Hb_005510_010 Hb_003096_040--Hb_005510_010 Hb_028795_010 Hb_028795_010 Hb_003633_140--Hb_028795_010 Hb_002609_090 Hb_002609_090 Hb_003633_140--Hb_002609_090 Hb_002316_050 Hb_002316_050 Hb_003633_140--Hb_002316_050 Hb_001999_250 Hb_001999_250 Hb_003633_140--Hb_001999_250 Hb_007257_050 Hb_007257_050 Hb_003633_140--Hb_007257_050 Hb_031089_030 Hb_031089_030 Hb_003633_140--Hb_031089_030 Hb_003525_020--Hb_000538_190 Hb_048848_010 Hb_048848_010 Hb_003525_020--Hb_048848_010 Hb_001369_770 Hb_001369_770 Hb_003525_020--Hb_001369_770 Hb_001584_010 Hb_001584_010 Hb_003525_020--Hb_001584_010 Hb_000362_090 Hb_000362_090 Hb_003525_020--Hb_000362_090 Hb_000640_150 Hb_000640_150 Hb_012404_040--Hb_000640_150 Hb_012404_040--Hb_001269_040 Hb_001351_040 Hb_001351_040 Hb_012404_040--Hb_001351_040 Hb_009848_030 Hb_009848_030 Hb_012404_040--Hb_009848_030 Hb_015388_030 Hb_015388_030 Hb_012404_040--Hb_015388_030 Hb_000538_190--Hb_001369_770 Hb_020178_050 Hb_020178_050 Hb_000538_190--Hb_020178_050 Hb_002942_110 Hb_002942_110 Hb_000538_190--Hb_002942_110 Hb_004976_060 Hb_004976_060 Hb_000538_190--Hb_004976_060 Hb_089100_040 Hb_089100_040 Hb_000538_190--Hb_089100_040 Hb_002686_280 Hb_002686_280 Hb_001269_040--Hb_002686_280 Hb_002273_080 Hb_002273_080 Hb_001269_040--Hb_002273_080 Hb_002273_050 Hb_002273_050 Hb_001269_040--Hb_002273_050 Hb_001338_050 Hb_001338_050 Hb_001269_040--Hb_001338_050 Hb_025194_010 Hb_025194_010 Hb_001269_040--Hb_025194_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
103.252 324.075 31.4451 48.734 104.048 109.554
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.4862 3.20433 1.6336 109.429 2.87582

CAGE analysis