Hb_010261_060

Information

Type -
Description -
Location Contig10261: 64453-65537
Sequence    

Annotation

kegg
ID tcc:TCM_005350
description hypothetical protein
nr
ID CDP08831.1
description unnamed protein product [Coffea canephora]
swissprot
ID -
description -
trembl
ID A0A068UK43
description Coffea canephora DH200=94 genomic scaffold, scaffold_35 OS=Coffea canephora GN=GSCOC_T00027939001 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01113: 64484-65538
cDNA
(Sanger)
(ID:Location)		 048_J22.ab1: 64586-65538

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010261_060 0.0 - - unnamed protein product [Coffea canephora]
2 Hb_002259_070 0.0788112199 - - taz protein, putative [Ricinus communis]
3 Hb_019253_030 0.0809472666 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP19-3-like [Citrus sinensis]
4 Hb_003528_060 0.08398606 - - PREDICTED: uncharacterized protein LOC105638256 isoform X2 [Jatropha curcas]
5 Hb_001538_120 0.0872454029 - - PREDICTED: FAD-linked sulfhydryl oxidase ERV1 [Jatropha curcas]
6 Hb_000025_530 0.087978993 - - PREDICTED: reactive oxygen species modulator 1 [Jatropha curcas]
7 Hb_001818_020 0.0905372218 - - PREDICTED: 60S ribosomal protein L21-1 [Phoenix dactylifera]
8 Hb_012753_230 0.0919915494 - - 60S ribosomal protein L24-1 isoform 2 [Theobroma cacao]
9 Hb_002893_060 0.0946237898 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 50 [Jatropha curcas]
10 Hb_000487_250 0.0958884602 - - 60S ribosomal protein L27e, putative [Ricinus communis]
11 Hb_013405_090 0.0966952271 - - PREDICTED: uncharacterized protein LOC105648433 isoform X1 [Jatropha curcas]
12 Hb_182305_020 0.0999893156 - - PREDICTED: actin-related protein 2/3 complex subunit 3 [Jatropha curcas]
13 Hb_000190_060 0.100797737 - - PREDICTED: uncharacterized protein LOC105644688 isoform X1 [Jatropha curcas]
14 Hb_000545_150 0.1014305227 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
15 Hb_009686_030 0.1018622379 - - -
16 Hb_001540_010 0.104086385 - - PREDICTED: uncharacterized protein LOC105639920 [Jatropha curcas]
17 Hb_005701_020 0.1041912313 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 21 [Jatropha curcas]
18 Hb_000057_070 0.1042616463 - - PREDICTED: 60S ribosomal protein L37-3-like [Cucumis sativus]
19 Hb_002296_060 0.1044312623 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Fragaria vesca subsp. vesca]
20 Hb_012573_070 0.1046807665 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_010261_060 Hb_010261_060 Hb_002259_070 Hb_002259_070 Hb_010261_060--Hb_002259_070 Hb_019253_030 Hb_019253_030 Hb_010261_060--Hb_019253_030 Hb_003528_060 Hb_003528_060 Hb_010261_060--Hb_003528_060 Hb_001538_120 Hb_001538_120 Hb_010261_060--Hb_001538_120 Hb_000025_530 Hb_000025_530 Hb_010261_060--Hb_000025_530 Hb_001818_020 Hb_001818_020 Hb_010261_060--Hb_001818_020 Hb_002259_070--Hb_019253_030 Hb_005511_160 Hb_005511_160 Hb_002259_070--Hb_005511_160 Hb_012753_230 Hb_012753_230 Hb_002259_070--Hb_012753_230 Hb_000574_160 Hb_000574_160 Hb_002259_070--Hb_000574_160 Hb_001780_040 Hb_001780_040 Hb_002259_070--Hb_001780_040 Hb_143766_050 Hb_143766_050 Hb_019253_030--Hb_143766_050 Hb_019253_030--Hb_000574_160 Hb_009686_030 Hb_009686_030 Hb_019253_030--Hb_009686_030 Hb_001540_010 Hb_001540_010 Hb_019253_030--Hb_001540_010 Hb_012573_070 Hb_012573_070 Hb_003528_060--Hb_012573_070 Hb_003528_060--Hb_001538_120 Hb_003927_140 Hb_003927_140 Hb_003528_060--Hb_003927_140 Hb_013405_090 Hb_013405_090 Hb_003528_060--Hb_013405_090 Hb_182305_020 Hb_182305_020 Hb_003528_060--Hb_182305_020 Hb_003528_060--Hb_001818_020 Hb_000057_070 Hb_000057_070 Hb_001538_120--Hb_000057_070 Hb_000545_150 Hb_000545_150 Hb_001538_120--Hb_000545_150 Hb_001538_120--Hb_012573_070 Hb_001538_120--Hb_001818_020 Hb_001538_120--Hb_013405_090 Hb_000531_020 Hb_000531_020 Hb_000025_530--Hb_000531_020 Hb_000260_080 Hb_000260_080 Hb_000025_530--Hb_000260_080 Hb_002893_060 Hb_002893_060 Hb_000025_530--Hb_002893_060 Hb_000703_140 Hb_000703_140 Hb_000025_530--Hb_000703_140 Hb_000970_010 Hb_000970_010 Hb_000025_530--Hb_000970_010 Hb_002477_240 Hb_002477_240 Hb_000025_530--Hb_002477_240 Hb_001818_020--Hb_000970_010 Hb_001818_020--Hb_000545_150 Hb_001584_070 Hb_001584_070 Hb_001818_020--Hb_001584_070 Hb_000025_600 Hb_000025_600 Hb_001818_020--Hb_000025_600 Hb_000007_100 Hb_000007_100 Hb_001818_020--Hb_000007_100 Hb_001638_260 Hb_001638_260 Hb_001818_020--Hb_001638_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
77.3701 13.6008 34.722 16.3756 73.1275 62.0415
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
82.4324 201.603 46.0475 39.4997 22.802

CAGE analysis