Hb_010264_020

Information

Type -
Description -
Location Contig10264: 24484-39418
Sequence    

Annotation

kegg
ID mdm:103407394
description protein ZINC INDUCED FACILITATOR 1-like
nr
ID CBI29173.3
description unnamed protein product [Vitis vinifera]
swissprot
ID -
description -
trembl
ID D7TF42
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0047g00020 PE=4 SV=1
Gene Ontology
ID GO:0016021
description protein zinc induced facilitator-like 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01117: 12825-54785
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010264_020 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_027506_030 0.062791186 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]
3 Hb_000303_060 0.082257687 - - o-methyltransferase, putative [Ricinus communis]
4 Hb_085962_010 0.0828809776 - - hypothetical protein POPTR_0017s11380g [Populus trichocarpa]
5 Hb_004804_010 0.0832041183 - - PREDICTED: trans-resveratrol di-O-methyltransferase-like [Populus euphratica]
6 Hb_032572_010 0.0972560344 - - PREDICTED: phospholipase A2-alpha [Jatropha curcas]
7 Hb_001396_030 0.0979873475 - - hypothetical protein POPTR_0001s13520g [Populus trichocarpa]
8 Hb_000635_100 0.0995315289 - - -
9 Hb_000152_880 0.1008326012 - - -
10 Hb_001430_040 0.1151754774 - - gamma-tocopherol methyltransferase [Hevea brasiliensis]
11 Hb_009456_010 0.1154632811 - - PREDICTED: cinnamoyl-CoA reductase 1-like isoform X3 [Populus euphratica]
12 Hb_169077_030 0.1172709677 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein RF9 [Jatropha curcas]
13 Hb_006788_110 0.1183246079 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
14 Hb_009767_060 0.1199916628 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Jatropha curcas]
15 Hb_002272_120 0.1210173421 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
16 Hb_033312_070 0.1219031276 - - hypothetical protein POPTR_0017s02960g [Populus trichocarpa]
17 Hb_001777_010 0.1222803697 - - -
18 Hb_003968_030 0.1229485626 - - UDP-glucosyltransferase, putative [Ricinus communis]
19 Hb_005332_160 0.1240488434 - - PREDICTED: BAG family molecular chaperone regulator 2-like [Jatropha curcas]
20 Hb_002566_020 0.124098965 - - hypothetical protein JCGZ_15085 [Jatropha curcas]

Gene co-expression network

sample Hb_010264_020 Hb_010264_020 Hb_027506_030 Hb_027506_030 Hb_010264_020--Hb_027506_030 Hb_000303_060 Hb_000303_060 Hb_010264_020--Hb_000303_060 Hb_085962_010 Hb_085962_010 Hb_010264_020--Hb_085962_010 Hb_004804_010 Hb_004804_010 Hb_010264_020--Hb_004804_010 Hb_032572_010 Hb_032572_010 Hb_010264_020--Hb_032572_010 Hb_001396_030 Hb_001396_030 Hb_010264_020--Hb_001396_030 Hb_027506_030--Hb_085962_010 Hb_027506_030--Hb_004804_010 Hb_027506_030--Hb_001396_030 Hb_027506_030--Hb_000303_060 Hb_027506_030--Hb_032572_010 Hb_000303_060--Hb_085962_010 Hb_000303_060--Hb_001396_030 Hb_009767_060 Hb_009767_060 Hb_000303_060--Hb_009767_060 Hb_000303_060--Hb_004804_010 Hb_085962_010--Hb_001396_030 Hb_085962_010--Hb_004804_010 Hb_002272_120 Hb_002272_120 Hb_085962_010--Hb_002272_120 Hb_138585_010 Hb_138585_010 Hb_004804_010--Hb_138585_010 Hb_012395_060 Hb_012395_060 Hb_004804_010--Hb_012395_060 Hb_169077_030 Hb_169077_030 Hb_004804_010--Hb_169077_030 Hb_001958_010 Hb_001958_010 Hb_032572_010--Hb_001958_010 Hb_032572_010--Hb_009767_060 Hb_032572_010--Hb_085962_010 Hb_000189_180 Hb_000189_180 Hb_032572_010--Hb_000189_180 Hb_032572_010--Hb_000303_060 Hb_000112_080 Hb_000112_080 Hb_001396_030--Hb_000112_080 Hb_007218_040 Hb_007218_040 Hb_001396_030--Hb_007218_040 Hb_005542_120 Hb_005542_120 Hb_001396_030--Hb_005542_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.451808 5.8673 13.2298 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.99992 5.6302

CAGE analysis