Hb_010270_010

Information

Type transcription factor
Description TF Family: bHLH
Location Contig10270: 7497-9763
Sequence    

Annotation

kegg
ID rcu:RCOM_1637360
description DNA binding protein, putative
nr
ID XP_002517323.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID O80674
description Transcription factor bHLH106 OS=Arabidopsis thaliana GN=BHLH106 PE=2 SV=1
trembl
ID B9RUA4
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_1637360 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor bhlh106-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01129: 7438-9748
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010270_010 0.0 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
2 Hb_039342_010 0.1038828121 - - pyruvate decarboxylase [Hevea brasiliensis]
3 Hb_001122_010 0.1174331074 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
4 Hb_002781_010 0.1396117414 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
5 Hb_001675_010 0.1561210665 - - hypothetical protein TRIUR3_09961 [Triticum urartu]
6 Hb_001799_190 0.161984974 - - PREDICTED: uncharacterized protein LOC105643221 [Jatropha curcas]
7 Hb_011716_110 0.1621405224 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
8 Hb_000371_060 0.1663672706 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 1 protein, putative [Ricinus communis]
9 Hb_001625_010 0.1669054513 - - PREDICTED: glyoxylate/hydroxypyruvate reductase HPR3-like [Jatropha curcas]
10 Hb_004162_120 0.1724329457 - - PREDICTED: vacuolar protein sorting-associated protein 41 homolog [Populus euphratica]
11 Hb_000083_130 0.1729227026 - - hypothetical protein RCOM_0884570 [Ricinus communis]
12 Hb_001251_060 0.1747539842 - - aldo/keto reductase AKR [Manihot esculenta]
13 Hb_001160_070 0.1782906795 - - PREDICTED: uncharacterized protein LOC105632163 [Jatropha curcas]
14 Hb_008221_170 0.1808585469 transcription factor TF Family: BES1 PREDICTED: BES1/BZR1 homolog protein 4 isoform X1 [Populus euphratica]
15 Hb_000009_140 0.1816738433 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 1 protein, putative [Ricinus communis]
16 Hb_000000_110 0.1817186784 - - hypothetical protein CISIN_1g0027772mg, partial [Citrus sinensis]
17 Hb_001414_040 0.1819533948 - - PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Jatropha curcas]
18 Hb_000362_090 0.1828387768 - - PREDICTED: uncharacterized protein LOC105635736 isoform X1 [Jatropha curcas]
19 Hb_000256_120 0.1856139833 - - PREDICTED: probable receptor-like protein kinase At1g80640 [Jatropha curcas]
20 Hb_000863_030 0.1856408353 transcription factor TF Family: Orphans two-component system sensor histidine kinase/response regulator, putative [Ricinus communis]

Gene co-expression network

sample Hb_010270_010 Hb_010270_010 Hb_039342_010 Hb_039342_010 Hb_010270_010--Hb_039342_010 Hb_001122_010 Hb_001122_010 Hb_010270_010--Hb_001122_010 Hb_002781_010 Hb_002781_010 Hb_010270_010--Hb_002781_010 Hb_001675_010 Hb_001675_010 Hb_010270_010--Hb_001675_010 Hb_001799_190 Hb_001799_190 Hb_010270_010--Hb_001799_190 Hb_011716_110 Hb_011716_110 Hb_010270_010--Hb_011716_110 Hb_144096_010 Hb_144096_010 Hb_039342_010--Hb_144096_010 Hb_008221_170 Hb_008221_170 Hb_039342_010--Hb_008221_170 Hb_000371_060 Hb_000371_060 Hb_039342_010--Hb_000371_060 Hb_007426_140 Hb_007426_140 Hb_039342_010--Hb_007426_140 Hb_000215_100 Hb_000215_100 Hb_039342_010--Hb_000215_100 Hb_001122_010--Hb_002781_010 Hb_000638_150 Hb_000638_150 Hb_001122_010--Hb_000638_150 Hb_009913_010 Hb_009913_010 Hb_001122_010--Hb_009913_010 Hb_000256_120 Hb_000256_120 Hb_001122_010--Hb_000256_120 Hb_001122_010--Hb_039342_010 Hb_002781_010--Hb_001675_010 Hb_004586_240 Hb_004586_240 Hb_002781_010--Hb_004586_240 Hb_001625_010 Hb_001625_010 Hb_002781_010--Hb_001625_010 Hb_000840_070 Hb_000840_070 Hb_002781_010--Hb_000840_070 Hb_001699_150 Hb_001699_150 Hb_001675_010--Hb_001699_150 Hb_002524_020 Hb_002524_020 Hb_001675_010--Hb_002524_020 Hb_001675_010--Hb_001799_190 Hb_001675_010--Hb_000371_060 Hb_003544_070 Hb_003544_070 Hb_001675_010--Hb_003544_070 Hb_001799_190--Hb_001699_150 Hb_001414_040 Hb_001414_040 Hb_001799_190--Hb_001414_040 Hb_000395_220 Hb_000395_220 Hb_001799_190--Hb_000395_220 Hb_001322_180 Hb_001322_180 Hb_001799_190--Hb_001322_180 Hb_001799_190--Hb_002524_020 Hb_004162_120 Hb_004162_120 Hb_011716_110--Hb_004162_120 Hb_065500_030 Hb_065500_030 Hb_011716_110--Hb_065500_030 Hb_001544_080 Hb_001544_080 Hb_011716_110--Hb_001544_080 Hb_009897_010 Hb_009897_010 Hb_011716_110--Hb_009897_010 Hb_000599_130 Hb_000599_130 Hb_011716_110--Hb_000599_130 Hb_080451_010 Hb_080451_010 Hb_011716_110--Hb_080451_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.11924 17.3304 6.3335 14.1138 2.81102 5.11852
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.80919 0.651362 2.26762 16.6363 2.07062

CAGE analysis