Hb_010308_010

Information

Type -
Description -
Location Contig10308: 32243-33207
Sequence    

Annotation

kegg
ID pop:POPTR_0003s07640g
description POPTRDRAFT_757043; hypothetical protein
nr
ID KDP43266.1
description hypothetical protein JCGZ_22818 [Jatropha curcas]
swissprot
ID Q7Z6E9
description E3 ubiquitin-protein ligase RBBP6 OS=Homo sapiens GN=RBBP6 PE=1 SV=1
trembl
ID A0A067L489
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22818 PE=4 SV=1
Gene Ontology
ID GO:0005488
description e3 ubiquitin-protein ligase rbbp6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010308_010 0.0 - - hypothetical protein JCGZ_22818 [Jatropha curcas]
2 Hb_000496_080 0.0011774589 - - Proteinase inhibitor, putative [Ricinus communis]
3 Hb_004330_050 0.0057219127 - - conserved hypothetical protein [Ricinus communis]
4 Hb_020112_010 0.0188115673 - - acyltransferase, putative [Ricinus communis]
5 Hb_001300_060 0.0337028968 - - PREDICTED: monothiol glutaredoxin-S6-like [Jatropha curcas]
6 Hb_000329_570 0.0538475263 - - -
7 Hb_000743_070 0.0721499842 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_21060 [Jatropha curcas]
8 Hb_006103_050 0.0896726932 - - -
9 Hb_006275_040 0.0904369257 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
10 Hb_004785_150 0.0918017332 - - hypothetical protein JCGZ_25207 [Jatropha curcas]
11 Hb_001404_060 0.0962870487 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
12 Hb_000127_050 0.1031138964 - - -
13 Hb_005551_070 0.1059127139 - - PREDICTED: uncharacterized protein LOC105635822 isoform X1 [Jatropha curcas]
14 Hb_073870_010 0.1084835187 - - hypothetical protein RCOM_0725510 [Ricinus communis]
15 Hb_005305_170 0.1250665358 - - PREDICTED: probable beta-1,3-galactosyltransferase 8 [Jatropha curcas]
16 Hb_000046_550 0.1261794037 - - PREDICTED: protein ALWAYS EARLY 3 isoform X2 [Jatropha curcas]
17 Hb_001863_520 0.1284267138 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005144_140 0.1397358626 - - conserved hypothetical protein [Ricinus communis]
19 Hb_023714_010 0.1401024134 - - hypothetical protein B456_007G377100 [Gossypium raimondii]
20 Hb_003858_050 0.1512657575 - - hypothetical protein PRUPE_ppa021882mg [Prunus persica]

Gene co-expression network

sample Hb_010308_010 Hb_010308_010 Hb_000496_080 Hb_000496_080 Hb_010308_010--Hb_000496_080 Hb_004330_050 Hb_004330_050 Hb_010308_010--Hb_004330_050 Hb_020112_010 Hb_020112_010 Hb_010308_010--Hb_020112_010 Hb_001300_060 Hb_001300_060 Hb_010308_010--Hb_001300_060 Hb_000329_570 Hb_000329_570 Hb_010308_010--Hb_000329_570 Hb_000743_070 Hb_000743_070 Hb_010308_010--Hb_000743_070 Hb_000496_080--Hb_004330_050 Hb_000496_080--Hb_020112_010 Hb_000496_080--Hb_001300_060 Hb_000496_080--Hb_000329_570 Hb_000496_080--Hb_000743_070 Hb_004330_050--Hb_020112_010 Hb_004330_050--Hb_001300_060 Hb_004330_050--Hb_000329_570 Hb_004330_050--Hb_000743_070 Hb_020112_010--Hb_001300_060 Hb_020112_010--Hb_000329_570 Hb_020112_010--Hb_000743_070 Hb_001300_060--Hb_000329_570 Hb_006275_040 Hb_006275_040 Hb_001300_060--Hb_006275_040 Hb_004785_150 Hb_004785_150 Hb_000329_570--Hb_004785_150 Hb_000127_050 Hb_000127_050 Hb_000743_070--Hb_000127_050 Hb_000743_070--Hb_004785_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0393884 0.177997 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0764278 0

CAGE analysis