Hb_010315_020

Information

Type -
Description -
Location Contig10315: 25178-31041
Sequence    

Annotation

kegg
ID rcu:RCOM_1017010
description ubiquitin fusion degradaton protein, putative
nr
ID XP_012080616.1
description PREDICTED: uncharacterized protein LOC105640834 [Jatropha curcas]
swissprot
ID Q92890
description Ubiquitin fusion degradation protein 1 homolog OS=Homo sapiens GN=UFD1L PE=1 SV=3
trembl
ID A0A067KEW0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13723 PE=4 SV=1
Gene Ontology
ID GO:0006511
description ubiquitin fusion degradaton

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01295: 25378-30877
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010315_020 0.0 - - PREDICTED: uncharacterized protein LOC105640834 [Jatropha curcas]
2 Hb_000212_420 0.0500978785 - - PREDICTED: probable protein phosphatase 2C 33 [Jatropha curcas]
3 Hb_000066_150 0.0563795075 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
4 Hb_008014_040 0.058332911 - - PREDICTED: uncharacterized protein LOC105649721 [Jatropha curcas]
5 Hb_000588_080 0.0715274172 - - PREDICTED: uncharacterized protein LOC105638459 [Jatropha curcas]
6 Hb_001776_020 0.0730938693 - - Protein kinase capable of phosphorylating tyrosine family protein [Populus trichocarpa]
7 Hb_044486_020 0.0767831335 - - CASTOR protein [Glycine max]
8 Hb_001856_180 0.0783816496 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
9 Hb_000020_160 0.0789524229 - - PREDICTED: E3 ubiquitin-protein ligase RING1-like [Gossypium raimondii]
10 Hb_000336_020 0.0796372378 - - PREDICTED: phospholipid-transporting ATPase 2 [Jatropha curcas]
11 Hb_000358_220 0.0800271347 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]
12 Hb_004531_100 0.0800471139 - - PREDICTED: zinc phosphodiesterase ELAC protein 2 isoform X1 [Jatropha curcas]
13 Hb_000069_480 0.0809608681 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003498_080 0.0815880974 - - PREDICTED: decapping 5-like protein isoform X2 [Jatropha curcas]
15 Hb_011457_140 0.082398905 - - PREDICTED: uncharacterized protein LOC105649947 [Jatropha curcas]
16 Hb_001541_150 0.0824714654 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000358_100 0.0828661946 - - PREDICTED: uncharacterized protein LOC105633371 [Jatropha curcas]
18 Hb_004204_130 0.0838302615 - - PREDICTED: uncharacterized protein LOC103930912 [Pyrus x bretschneideri]
19 Hb_133702_020 0.0841585509 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_002883_030 0.0843388497 - - PREDICTED: uncharacterized protein LOC105638222 [Jatropha curcas]

Gene co-expression network

sample Hb_010315_020 Hb_010315_020 Hb_000212_420 Hb_000212_420 Hb_010315_020--Hb_000212_420 Hb_000066_150 Hb_000066_150 Hb_010315_020--Hb_000066_150 Hb_008014_040 Hb_008014_040 Hb_010315_020--Hb_008014_040 Hb_000588_080 Hb_000588_080 Hb_010315_020--Hb_000588_080 Hb_001776_020 Hb_001776_020 Hb_010315_020--Hb_001776_020 Hb_044486_020 Hb_044486_020 Hb_010315_020--Hb_044486_020 Hb_001329_250 Hb_001329_250 Hb_000212_420--Hb_001329_250 Hb_003498_080 Hb_003498_080 Hb_000212_420--Hb_003498_080 Hb_000212_420--Hb_008014_040 Hb_000212_420--Hb_001776_020 Hb_010042_030 Hb_010042_030 Hb_000212_420--Hb_010042_030 Hb_012055_110 Hb_012055_110 Hb_000066_150--Hb_012055_110 Hb_002007_110 Hb_002007_110 Hb_000066_150--Hb_002007_110 Hb_000358_220 Hb_000358_220 Hb_000066_150--Hb_000358_220 Hb_000172_340 Hb_000172_340 Hb_000066_150--Hb_000172_340 Hb_004032_200 Hb_004032_200 Hb_000066_150--Hb_004032_200 Hb_008511_020 Hb_008511_020 Hb_008014_040--Hb_008511_020 Hb_000069_570 Hb_000069_570 Hb_008014_040--Hb_000069_570 Hb_022250_010 Hb_022250_010 Hb_008014_040--Hb_022250_010 Hb_159809_030 Hb_159809_030 Hb_008014_040--Hb_159809_030 Hb_001059_130 Hb_001059_130 Hb_000588_080--Hb_001059_130 Hb_000020_160 Hb_000020_160 Hb_000588_080--Hb_000020_160 Hb_000069_480 Hb_000069_480 Hb_000588_080--Hb_000069_480 Hb_001194_020 Hb_001194_020 Hb_000588_080--Hb_001194_020 Hb_000588_080--Hb_044486_020 Hb_001776_020--Hb_003498_080 Hb_001481_060 Hb_001481_060 Hb_001776_020--Hb_001481_060 Hb_004531_100 Hb_004531_100 Hb_001776_020--Hb_004531_100 Hb_000103_340 Hb_000103_340 Hb_001776_020--Hb_000103_340 Hb_000359_190 Hb_000359_190 Hb_044486_020--Hb_000359_190 Hb_044486_020--Hb_000020_160 Hb_001677_200 Hb_001677_200 Hb_044486_020--Hb_001677_200 Hb_000890_030 Hb_000890_030 Hb_044486_020--Hb_000890_030 Hb_086063_020 Hb_086063_020 Hb_044486_020--Hb_086063_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.9334 7.45288 5.69276 8.6634 3.72044 5.82453
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.5356 2.34814 2.69226 4.63459 7.33183

CAGE analysis