Hb_010315_050

Information

Type -
Description -
Location Contig10315: 60504-61752
Sequence    

Annotation

kegg
ID pop:POPTR_0002s07340g
description POPTRDRAFT_798647; pentatricopeptide repeat-containing family protein
nr
ID KDP43061.1
description hypothetical protein JCGZ_25247 [Jatropha curcas]
swissprot
ID Q9LVF9
description Pentatricopeptide repeat-containing protein At3g21470 OS=Arabidopsis thaliana GN=PCMP-E29 PE=2 SV=1
trembl
ID A0A067L3L8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25247 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010315_050 0.0 - - hypothetical protein JCGZ_25247 [Jatropha curcas]
2 Hb_004586_190 0.1291825886 - - PREDICTED: protein CutA, chloroplastic [Jatropha curcas]
3 Hb_000059_040 0.154695221 - - Uncharacterized protein TCM_020504 [Theobroma cacao]
4 Hb_005839_120 0.1547822994 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
5 Hb_001277_220 0.1655456493 - - PREDICTED: putative calcium-transporting ATPase 13, plasma membrane-type [Jatropha curcas]
6 Hb_011671_330 0.1670878229 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 4 [Jatropha curcas]
7 Hb_006478_110 0.1694706161 - - type I inositol polyphosphate 5-phosphatase, putative [Ricinus communis]
8 Hb_001633_110 0.1761952375 - - PREDICTED: pentatricopeptide repeat-containing protein At3g26782, mitochondrial [Jatropha curcas]
9 Hb_002007_270 0.1772690022 - - PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At3g05340-like [Jatropha curcas]
10 Hb_000976_010 0.1809771276 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 4 [Jatropha curcas]
11 Hb_001817_180 0.1833153744 - - PREDICTED: RING-H2 finger protein ATL47 [Jatropha curcas]
12 Hb_026048_100 0.1845250584 - - PREDICTED: putative cell division cycle ATPase [Jatropha curcas]
13 Hb_003638_030 0.1851302062 - - PREDICTED: uncharacterized protein LOC105645805 [Jatropha curcas]
14 Hb_005078_040 0.1894156843 desease resistance Gene Name: NB-ARC putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
15 Hb_000358_080 0.1903047942 - - Ribonuclease 3 [Gossypium arboreum]
16 Hb_000027_270 0.1910076239 - - PREDICTED: zinc finger protein 6 [Jatropha curcas]
17 Hb_000016_110 0.1916983959 - - PREDICTED: pentatricopeptide repeat-containing protein At4g38010 [Jatropha curcas]
18 Hb_000172_400 0.1919184942 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
19 Hb_001454_060 0.1926296674 - - uncharacterized protein LOC100527252 [Glycine max]
20 Hb_029866_130 0.192793134 - - hypothetical protein JCGZ_00035 [Jatropha curcas]

Gene co-expression network

sample Hb_010315_050 Hb_010315_050 Hb_004586_190 Hb_004586_190 Hb_010315_050--Hb_004586_190 Hb_000059_040 Hb_000059_040 Hb_010315_050--Hb_000059_040 Hb_005839_120 Hb_005839_120 Hb_010315_050--Hb_005839_120 Hb_001277_220 Hb_001277_220 Hb_010315_050--Hb_001277_220 Hb_011671_330 Hb_011671_330 Hb_010315_050--Hb_011671_330 Hb_006478_110 Hb_006478_110 Hb_010315_050--Hb_006478_110 Hb_000172_400 Hb_000172_400 Hb_004586_190--Hb_000172_400 Hb_003638_030 Hb_003638_030 Hb_004586_190--Hb_003638_030 Hb_002207_100 Hb_002207_100 Hb_004586_190--Hb_002207_100 Hb_002007_270 Hb_002007_270 Hb_004586_190--Hb_002007_270 Hb_000371_110 Hb_000371_110 Hb_004586_190--Hb_000371_110 Hb_026048_100 Hb_026048_100 Hb_004586_190--Hb_026048_100 Hb_002505_040 Hb_002505_040 Hb_000059_040--Hb_002505_040 Hb_002073_040 Hb_002073_040 Hb_000059_040--Hb_002073_040 Hb_000009_590 Hb_000009_590 Hb_000059_040--Hb_000009_590 Hb_000059_040--Hb_004586_190 Hb_006588_090 Hb_006588_090 Hb_000059_040--Hb_006588_090 Hb_000953_010 Hb_000953_010 Hb_005839_120--Hb_000953_010 Hb_000173_400 Hb_000173_400 Hb_005839_120--Hb_000173_400 Hb_010710_010 Hb_010710_010 Hb_005839_120--Hb_010710_010 Hb_000358_080 Hb_000358_080 Hb_005839_120--Hb_000358_080 Hb_002810_020 Hb_002810_020 Hb_005839_120--Hb_002810_020 Hb_000490_030 Hb_000490_030 Hb_005839_120--Hb_000490_030 Hb_000009_580 Hb_000009_580 Hb_001277_220--Hb_000009_580 Hb_001277_220--Hb_002073_040 Hb_001277_220--Hb_000059_040 Hb_001318_030 Hb_001318_030 Hb_001277_220--Hb_001318_030 Hb_026698_010 Hb_026698_010 Hb_001277_220--Hb_026698_010 Hb_011671_330--Hb_006478_110 Hb_000413_130 Hb_000413_130 Hb_011671_330--Hb_000413_130 Hb_029866_130 Hb_029866_130 Hb_011671_330--Hb_029866_130 Hb_029281_010 Hb_029281_010 Hb_011671_330--Hb_029281_010 Hb_001633_110 Hb_001633_110 Hb_011671_330--Hb_001633_110 Hb_004931_040 Hb_004931_040 Hb_011671_330--Hb_004931_040 Hb_006478_110--Hb_000413_130 Hb_000161_030 Hb_000161_030 Hb_006478_110--Hb_000161_030 Hb_001454_060 Hb_001454_060 Hb_006478_110--Hb_001454_060 Hb_002341_030 Hb_002341_030 Hb_006478_110--Hb_002341_030 Hb_012654_010 Hb_012654_010 Hb_006478_110--Hb_012654_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.476574 0.471975 0.0511031 0 0.724234 1.10995
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.301057 0.473565 0.726763 0.142804 0

CAGE analysis