Hb_010315_090

Information

Type -
Description -
Location Contig10315: 82800-93276
Sequence    

Annotation

kegg
ID rcu:RCOM_0138850
description suppressor of ty, putative
nr
ID XP_002526173.1
description suppressor of ty, putative [Ricinus communis]
swissprot
ID Q9STN3
description Putative transcription elongation factor SPT5 homolog 1 OS=Arabidopsis thaliana GN=At4g08350 PE=1 SV=2
trembl
ID B9SJK4
description Transcription elongation factor SPT5 OS=Ricinus communis GN=RCOM_0138850 PE=3 SV=1
Gene Ontology
ID GO:0005634
description transcription elongation factor spt5 homolog 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01298: 82993-93181 , PASA_asmbl_01299: 85116-85482
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010315_090 0.0 - - suppressor of ty, putative [Ricinus communis]
2 Hb_000329_130 0.0569712844 - - beta-tubulin cofactor d, putative [Ricinus communis]
3 Hb_001417_050 0.0572016883 - - PREDICTED: G patch domain-containing protein TGH [Jatropha curcas]
4 Hb_001493_040 0.0603576305 - - PREDICTED: FACT complex subunit SPT16-like [Jatropha curcas]
5 Hb_019153_020 0.0622866815 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
6 Hb_004884_010 0.0624133074 - - PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Jatropha curcas]
7 Hb_140049_020 0.0667896852 - - PREDICTED: cell division cycle protein 73 [Jatropha curcas]
8 Hb_147737_010 0.0673031688 - - PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X2 [Jatropha curcas]
9 Hb_034243_020 0.0679383861 - - PREDICTED: elongator complex protein 1 isoform X1 [Jatropha curcas]
10 Hb_000714_050 0.0690514557 - - PREDICTED: pentatricopeptide repeat-containing protein At2g16880-like [Jatropha curcas]
11 Hb_004429_160 0.069628875 - - PREDICTED: serine/threonine-protein kinase TAO3 isoform X1 [Jatropha curcas]
12 Hb_002221_050 0.0702676252 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP65 isoform X1 [Jatropha curcas]
13 Hb_015026_050 0.0717403369 - - XPA-binding protein, putative [Ricinus communis]
14 Hb_000935_090 0.0723207586 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
15 Hb_133047_010 0.072394724 - - xanthine dehydrogenase, putative [Ricinus communis]
16 Hb_000529_260 0.073677644 - - PREDICTED: protein SGT1 homolog At5g65490 [Jatropha curcas]
17 Hb_007885_070 0.0742796055 - - cleavage and polyadenylation specificity factor, putative [Ricinus communis]
18 Hb_028872_120 0.0745269707 - - PREDICTED: cyclin-dependent kinase G-2 [Jatropha curcas]
19 Hb_000796_190 0.0747008058 - - hypothetical protein F383_31148 [Gossypium arboreum]
20 Hb_004543_030 0.0747470471 - - PREDICTED: FIP1[V]-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_010315_090 Hb_010315_090 Hb_000329_130 Hb_000329_130 Hb_010315_090--Hb_000329_130 Hb_001417_050 Hb_001417_050 Hb_010315_090--Hb_001417_050 Hb_001493_040 Hb_001493_040 Hb_010315_090--Hb_001493_040 Hb_019153_020 Hb_019153_020 Hb_010315_090--Hb_019153_020 Hb_004884_010 Hb_004884_010 Hb_010315_090--Hb_004884_010 Hb_140049_020 Hb_140049_020 Hb_010315_090--Hb_140049_020 Hb_147737_010 Hb_147737_010 Hb_000329_130--Hb_147737_010 Hb_017895_020 Hb_017895_020 Hb_000329_130--Hb_017895_020 Hb_000329_130--Hb_140049_020 Hb_007558_120 Hb_007558_120 Hb_000329_130--Hb_007558_120 Hb_009151_020 Hb_009151_020 Hb_000329_130--Hb_009151_020 Hb_001417_050--Hb_001493_040 Hb_000160_290 Hb_000160_290 Hb_001417_050--Hb_000160_290 Hb_002422_050 Hb_002422_050 Hb_001417_050--Hb_002422_050 Hb_006252_020 Hb_006252_020 Hb_001417_050--Hb_006252_020 Hb_000796_190 Hb_000796_190 Hb_001417_050--Hb_000796_190 Hb_000935_090 Hb_000935_090 Hb_001493_040--Hb_000935_090 Hb_034243_020 Hb_034243_020 Hb_001493_040--Hb_034243_020 Hb_001493_040--Hb_000160_290 Hb_001493_040--Hb_002422_050 Hb_000032_010 Hb_000032_010 Hb_019153_020--Hb_000032_010 Hb_019153_020--Hb_140049_020 Hb_000417_160 Hb_000417_160 Hb_019153_020--Hb_000417_160 Hb_002221_050 Hb_002221_050 Hb_019153_020--Hb_002221_050 Hb_000529_260 Hb_000529_260 Hb_019153_020--Hb_000529_260 Hb_133047_010 Hb_133047_010 Hb_004884_010--Hb_133047_010 Hb_004884_010--Hb_034243_020 Hb_002022_070 Hb_002022_070 Hb_004884_010--Hb_002022_070 Hb_148909_030 Hb_148909_030 Hb_004884_010--Hb_148909_030 Hb_004543_030 Hb_004543_030 Hb_004884_010--Hb_004543_030 Hb_000313_340 Hb_000313_340 Hb_140049_020--Hb_000313_340 Hb_005539_190 Hb_005539_190 Hb_140049_020--Hb_005539_190 Hb_007229_040 Hb_007229_040 Hb_140049_020--Hb_007229_040 Hb_000363_130 Hb_000363_130 Hb_140049_020--Hb_000363_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
43.8349 36.0773 17.8074 13.2789 48.3872 44.9183
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.431 10.0977 16.9165 24.2059 24.3911

CAGE analysis