Hb_010317_030

Information

Type -
Description -
Location Contig10317: 18820-19360
Sequence    

Annotation

kegg
ID eus:EUTSA_v10015923mg
description hypothetical protein
nr
ID ABK23942.1
description unknown [Picea sitchensis]
swissprot
ID Q9AT35
description 60S ribosomal protein L23a OS=Daucus carota GN=RPL23A PE=2 SV=1
trembl
ID A9NTI1
description Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l23a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010317_030 0.0 - - unknown [Picea sitchensis]
2 Hb_024272_010 0.1419369734 - - PREDICTED: uncharacterized protein LOC104213140 [Nicotiana sylvestris]
3 Hb_007827_020 0.2107089748 - - -
4 Hb_007603_010 0.2198243497 - - conserved hypothetical protein [Ricinus communis]
5 Hb_071869_010 0.2272651356 - - PREDICTED: uncharacterized protein LOC105628378 isoform X2 [Jatropha curcas]
6 Hb_005656_060 0.239149309 - - -
7 Hb_001983_010 0.2429499896 - - -
8 Hb_001450_100 0.2452666102 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
9 Hb_005867_080 0.2462708595 - - PREDICTED: protein NETWORKED 2A [Jatropha curcas]
10 Hb_135442_010 0.2507401843 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
11 Hb_015707_010 0.2524451714 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
12 Hb_090497_010 0.252855581 - - PREDICTED: Werner Syndrome-like exonuclease [Jatropha curcas]
13 Hb_012725_100 0.2547815305 - - conserved hypothetical protein [Ricinus communis]
14 Hb_022288_020 0.2561696893 - - hypothetical protein POPTR_0006s08590g [Populus trichocarpa]
15 Hb_003881_050 0.2586877926 - - PREDICTED: uncharacterized protein LOC104213140 [Nicotiana sylvestris]
16 Hb_011639_050 0.2596301271 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002326_050 0.2596478314 - - PREDICTED: uncharacterized protein LOC105633701 [Jatropha curcas]
18 Hb_007810_100 0.2621852152 - - Synaptic glycoprotein SC2, putative [Ricinus communis]
19 Hb_000441_160 0.2626605839 - - ARF GTPase activator, putative [Ricinus communis]
20 Hb_002243_040 0.2633770013 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_00227 [Jatropha curcas]

Gene co-expression network

sample Hb_010317_030 Hb_010317_030 Hb_024272_010 Hb_024272_010 Hb_010317_030--Hb_024272_010 Hb_007827_020 Hb_007827_020 Hb_010317_030--Hb_007827_020 Hb_007603_010 Hb_007603_010 Hb_010317_030--Hb_007603_010 Hb_071869_010 Hb_071869_010 Hb_010317_030--Hb_071869_010 Hb_005656_060 Hb_005656_060 Hb_010317_030--Hb_005656_060 Hb_001983_010 Hb_001983_010 Hb_010317_030--Hb_001983_010 Hb_024272_010--Hb_007827_020 Hb_007810_100 Hb_007810_100 Hb_024272_010--Hb_007810_100 Hb_024272_010--Hb_071869_010 Hb_012725_100 Hb_012725_100 Hb_024272_010--Hb_012725_100 Hb_003106_010 Hb_003106_010 Hb_024272_010--Hb_003106_010 Hb_000256_210 Hb_000256_210 Hb_007827_020--Hb_000256_210 Hb_002159_030 Hb_002159_030 Hb_007827_020--Hb_002159_030 Hb_000441_160 Hb_000441_160 Hb_007827_020--Hb_000441_160 Hb_007348_040 Hb_007348_040 Hb_007827_020--Hb_007348_040 Hb_000270_500 Hb_000270_500 Hb_007827_020--Hb_000270_500 Hb_007904_080 Hb_007904_080 Hb_007603_010--Hb_007904_080 Hb_000041_020 Hb_000041_020 Hb_007603_010--Hb_000041_020 Hb_109168_010 Hb_109168_010 Hb_007603_010--Hb_109168_010 Hb_000850_050 Hb_000850_050 Hb_007603_010--Hb_000850_050 Hb_001484_120 Hb_001484_120 Hb_007603_010--Hb_001484_120 Hb_000099_210 Hb_000099_210 Hb_007603_010--Hb_000099_210 Hb_000206_190 Hb_000206_190 Hb_071869_010--Hb_000206_190 Hb_002154_070 Hb_002154_070 Hb_071869_010--Hb_002154_070 Hb_000928_050 Hb_000928_050 Hb_071869_010--Hb_000928_050 Hb_000100_130 Hb_000100_130 Hb_071869_010--Hb_000100_130 Hb_000457_160 Hb_000457_160 Hb_005656_060--Hb_000457_160 Hb_005867_080 Hb_005867_080 Hb_005656_060--Hb_005867_080 Hb_022288_020 Hb_022288_020 Hb_005656_060--Hb_022288_020 Hb_041774_010 Hb_041774_010 Hb_005656_060--Hb_041774_010 Hb_001767_020 Hb_001767_020 Hb_005656_060--Hb_001767_020 Hb_001450_100 Hb_001450_100 Hb_001983_010--Hb_001450_100 Hb_001983_010--Hb_012725_100 Hb_011645_030 Hb_011645_030 Hb_001983_010--Hb_011645_030 Hb_001983_010--Hb_024272_010 Hb_077211_010 Hb_077211_010 Hb_001983_010--Hb_077211_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
320.219 43.7543 52.5869 58.515 161.611 664.717
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.594264 305.646 96.0988 49.632

CAGE analysis