Hb_010320_020

Information

Type -
Description -
Location Contig10320: 22957-26861
Sequence    

Annotation

kegg
ID tcc:TCM_038736
description hypothetical protein
nr
ID XP_009787832.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
swissprot
ID P10401
description Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID A0A061GPE8
description Uncharacterized protein OS=Theobroma cacao GN=TCM_038736 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010320_020 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
2 Hb_067776_020 0.2711331477 - - PREDICTED: signal recognition particle 54 kDa protein, chloroplastic [Jatropha curcas]
3 Hb_001898_090 0.2739322926 - - PREDICTED: stromal 70 kDa heat shock-related protein, chloroplastic [Jatropha curcas]
4 Hb_001005_090 0.2794331311 - - PREDICTED: uncharacterized protein LOC105630219 [Jatropha curcas]
5 Hb_000808_080 0.2832989284 - - PREDICTED: dnaJ homolog subfamily B member 3 [Jatropha curcas]
6 Hb_006054_050 0.2871936492 - - PREDICTED: uncharacterized protein LOC105649250, partial [Jatropha curcas]
7 Hb_000832_300 0.2873917724 - - -
8 Hb_003388_030 0.2876301654 - - PREDICTED: uncharacterized protein LOC105649746 isoform X1 [Jatropha curcas]
9 Hb_009767_090 0.2897330446 - - conserved hypothetical protein [Ricinus communis]
10 Hb_007313_100 0.2902834663 desease resistance Gene Name: NB-ARC Disease resistance protein RPS2, putative [Ricinus communis]
11 Hb_005470_020 0.2911242888 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Jatropha curcas]
12 Hb_000504_150 0.2962240092 - - PREDICTED: nuclear pore complex protein GP210 [Jatropha curcas]
13 Hb_008489_020 0.2968467486 - - PREDICTED: uncharacterized protein LOC105644663 [Jatropha curcas]
14 Hb_000463_030 0.2969925821 - - -
15 Hb_003216_120 0.2999907201 - - PREDICTED: zinc finger CCCH domain-containing protein 18 isoform X2 [Jatropha curcas]
16 Hb_000170_190 0.3001831303 - - PREDICTED: uncharacterized protein LOC105638988 [Jatropha curcas]
17 Hb_014497_090 0.3010910108 - - hypothetical protein PHAVU_002G037900g [Phaseolus vulgaris]
18 Hb_002084_040 0.3012527583 - - PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Jatropha curcas]
19 Hb_004770_040 0.3023365005 - - PREDICTED: serine carboxypeptidase-like 31 [Eucalyptus grandis]
20 Hb_001019_120 0.3024668554 - - PREDICTED: uncharacterized protein LOC105639315 [Jatropha curcas]

Gene co-expression network

sample Hb_010320_020 Hb_010320_020 Hb_067776_020 Hb_067776_020 Hb_010320_020--Hb_067776_020 Hb_001898_090 Hb_001898_090 Hb_010320_020--Hb_001898_090 Hb_001005_090 Hb_001005_090 Hb_010320_020--Hb_001005_090 Hb_000808_080 Hb_000808_080 Hb_010320_020--Hb_000808_080 Hb_006054_050 Hb_006054_050 Hb_010320_020--Hb_006054_050 Hb_000832_300 Hb_000832_300 Hb_010320_020--Hb_000832_300 Hb_003388_030 Hb_003388_030 Hb_067776_020--Hb_003388_030 Hb_000084_280 Hb_000084_280 Hb_067776_020--Hb_000084_280 Hb_005470_020 Hb_005470_020 Hb_067776_020--Hb_005470_020 Hb_000170_190 Hb_000170_190 Hb_067776_020--Hb_000170_190 Hb_004987_070 Hb_004987_070 Hb_067776_020--Hb_004987_070 Hb_001009_100 Hb_001009_100 Hb_067776_020--Hb_001009_100 Hb_000849_020 Hb_000849_020 Hb_001898_090--Hb_000849_020 Hb_000010_180 Hb_000010_180 Hb_001898_090--Hb_000010_180 Hb_000010_390 Hb_000010_390 Hb_001898_090--Hb_000010_390 Hb_000107_400 Hb_000107_400 Hb_001898_090--Hb_000107_400 Hb_012286_010 Hb_012286_010 Hb_001898_090--Hb_012286_010 Hb_002749_110 Hb_002749_110 Hb_001898_090--Hb_002749_110 Hb_000365_090 Hb_000365_090 Hb_001005_090--Hb_000365_090 Hb_029921_010 Hb_029921_010 Hb_001005_090--Hb_029921_010 Hb_002900_140 Hb_002900_140 Hb_001005_090--Hb_002900_140 Hb_000982_110 Hb_000982_110 Hb_001005_090--Hb_000982_110 Hb_001005_090--Hb_000808_080 Hb_006132_070 Hb_006132_070 Hb_001005_090--Hb_006132_070 Hb_005488_060 Hb_005488_060 Hb_000808_080--Hb_005488_060 Hb_008489_020 Hb_008489_020 Hb_000808_080--Hb_008489_020 Hb_000808_080--Hb_001898_090 Hb_009767_090 Hb_009767_090 Hb_000808_080--Hb_009767_090 Hb_001085_250 Hb_001085_250 Hb_000808_080--Hb_001085_250 Hb_000640_320 Hb_000640_320 Hb_000808_080--Hb_000640_320 Hb_012146_030 Hb_012146_030 Hb_006054_050--Hb_012146_030 Hb_015026_080 Hb_015026_080 Hb_006054_050--Hb_015026_080 Hb_000753_200 Hb_000753_200 Hb_006054_050--Hb_000753_200 Hb_006788_160 Hb_006788_160 Hb_006054_050--Hb_006788_160 Hb_035755_010 Hb_035755_010 Hb_006054_050--Hb_035755_010 Hb_000130_260 Hb_000130_260 Hb_006054_050--Hb_000130_260 Hb_002291_070 Hb_002291_070 Hb_000832_300--Hb_002291_070 Hb_000096_180 Hb_000096_180 Hb_000832_300--Hb_000096_180 Hb_002471_210 Hb_002471_210 Hb_000832_300--Hb_002471_210 Hb_014497_090 Hb_014497_090 Hb_000832_300--Hb_014497_090 Hb_001811_120 Hb_001811_120 Hb_000832_300--Hb_001811_120 Hb_027073_060 Hb_027073_060 Hb_000832_300--Hb_027073_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.02534 0.004921 0.00465876 0 0.0171795 0.0208924
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0135588 0 0 0.00846091 0.022791

CAGE analysis