Hb_010326_020

Information

Type -
Description -
Location Contig10326: 8230-10732
Sequence    

Annotation

kegg
ID rcu:RCOM_1590520
description Thioredoxin, putative
nr
ID XP_012071661.1
description PREDICTED: thioredoxin-like 4, chloroplastic [Jatropha curcas]
swissprot
ID Q9C5C5
description Thioredoxin-like 4, chloroplastic OS=Arabidopsis thaliana GN=At1g07700 PE=2 SV=1
trembl
ID A0A067KQ52
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04261 PE=4 SV=1
Gene Ontology
ID GO:0005623
description thioredoxin-like chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01309: 8162-10280
cDNA
(Sanger)
(ID:Location)		 051_C18.ab1: 8227-9786

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010326_020 0.0 - - PREDICTED: thioredoxin-like 4, chloroplastic [Jatropha curcas]
2 Hb_003632_020 0.0601530207 - - calcium-binding family protein [Populus trichocarpa]
3 Hb_011724_040 0.0698884753 - - PREDICTED: uncharacterized protein LOC105632860 [Jatropha curcas]
4 Hb_003020_120 0.0812652872 - - PREDICTED: protein TIC 62, chloroplastic [Populus euphratica]
5 Hb_000230_420 0.0823749943 - - GS [Hevea brasiliensis subsp. brasiliensis]
6 Hb_000369_110 0.082608955 - - ankyrin repeat-containing protein, putative [Ricinus communis]
7 Hb_000049_100 0.0827088593 - - Photosystem II reaction center W protein, putative [Ricinus communis]
8 Hb_008195_070 0.0828910238 - - PREDICTED: thylakoid lumenal protein At1g12250, chloroplastic isoform X2 [Jatropha curcas]
9 Hb_001277_350 0.0836093428 - - early light-induced protein, putative [Ricinus communis]
10 Hb_001534_060 0.0836648467 - - PREDICTED: UDP-glycosyltransferase 73C3 [Jatropha curcas]
11 Hb_003120_020 0.084627954 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 13-like [Prunus mume]
12 Hb_000881_070 0.0852885786 - - nucleic acid binding protein, putative [Ricinus communis]
13 Hb_002534_020 0.0859199793 - - PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Gossypium raimondii]
14 Hb_000069_760 0.0892317573 - - PREDICTED: protein CURVATURE THYLAKOID 1A, chloroplastic [Jatropha curcas]
15 Hb_002375_030 0.0894853911 - - F-box family protein [Populus trichocarpa]
16 Hb_002121_050 0.090666696 - - hypothetical protein EUGRSUZ_D02586 [Eucalyptus grandis]
17 Hb_000497_050 0.0917527606 - - PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Jatropha curcas]
18 Hb_000083_180 0.0932238619 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
19 Hb_003602_100 0.0948137555 - - Glutamyl-tRNA reductase 1, chloroplast precursor, putative [Ricinus communis]
20 Hb_002752_020 0.0951671418 - - FKBP-type peptidyl-prolyl cis-trans isomerase 3 family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_010326_020 Hb_010326_020 Hb_003632_020 Hb_003632_020 Hb_010326_020--Hb_003632_020 Hb_011724_040 Hb_011724_040 Hb_010326_020--Hb_011724_040 Hb_003020_120 Hb_003020_120 Hb_010326_020--Hb_003020_120 Hb_000230_420 Hb_000230_420 Hb_010326_020--Hb_000230_420 Hb_000369_110 Hb_000369_110 Hb_010326_020--Hb_000369_110 Hb_000049_100 Hb_000049_100 Hb_010326_020--Hb_000049_100 Hb_003632_020--Hb_011724_040 Hb_002121_050 Hb_002121_050 Hb_003632_020--Hb_002121_050 Hb_002375_030 Hb_002375_030 Hb_003632_020--Hb_002375_030 Hb_001277_350 Hb_001277_350 Hb_003632_020--Hb_001277_350 Hb_008195_070 Hb_008195_070 Hb_003632_020--Hb_008195_070 Hb_002534_020 Hb_002534_020 Hb_011724_040--Hb_002534_020 Hb_001534_060 Hb_001534_060 Hb_011724_040--Hb_001534_060 Hb_006132_080 Hb_006132_080 Hb_011724_040--Hb_006132_080 Hb_011724_040--Hb_002121_050 Hb_033187_010 Hb_033187_010 Hb_011724_040--Hb_033187_010 Hb_000083_180 Hb_000083_180 Hb_003020_120--Hb_000083_180 Hb_013405_110 Hb_013405_110 Hb_003020_120--Hb_013405_110 Hb_004899_190 Hb_004899_190 Hb_003020_120--Hb_004899_190 Hb_000948_240 Hb_000948_240 Hb_003020_120--Hb_000948_240 Hb_003847_070 Hb_003847_070 Hb_003020_120--Hb_003847_070 Hb_002592_040 Hb_002592_040 Hb_003020_120--Hb_002592_040 Hb_001292_030 Hb_001292_030 Hb_000230_420--Hb_001292_030 Hb_000531_100 Hb_000531_100 Hb_000230_420--Hb_000531_100 Hb_000230_420--Hb_002534_020 Hb_000230_420--Hb_000083_180 Hb_000230_420--Hb_001277_350 Hb_003038_060 Hb_003038_060 Hb_000230_420--Hb_003038_060 Hb_007537_040 Hb_007537_040 Hb_000369_110--Hb_007537_040 Hb_003025_160 Hb_003025_160 Hb_000369_110--Hb_003025_160 Hb_000369_110--Hb_002121_050 Hb_008225_050 Hb_008225_050 Hb_000369_110--Hb_008225_050 Hb_002752_020 Hb_002752_020 Hb_000369_110--Hb_002752_020 Hb_000254_130 Hb_000254_130 Hb_000369_110--Hb_000254_130 Hb_000390_160 Hb_000390_160 Hb_000049_100--Hb_000390_160 Hb_000049_100--Hb_000254_130 Hb_003120_020 Hb_003120_020 Hb_000049_100--Hb_003120_020 Hb_000049_100--Hb_002375_030 Hb_000049_100--Hb_003632_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.140491 0.312389 16.178 7.90621 0.264539 0.139223
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.146769 0.057729 0 0.138548 26.102

CAGE analysis