Hb_010327_010

Information

Type -
Description -
Location Contig10327: 13994-19215
Sequence    

Annotation

kegg
ID rcu:RCOM_0358080
description calcium ion binding protein, putative
nr
ID XP_002534034.1
description calcium ion binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T715
description Calcium ion binding protein, putative OS=Ricinus communis GN=RCOM_0358080 PE=4 SV=1
Gene Ontology
ID GO:0005509
description calcium ion binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01311: 14342-18063
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010327_010 0.0 - - calcium ion binding protein, putative [Ricinus communis]
2 Hb_004712_140 0.0944256541 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
3 Hb_007371_020 0.0965353398 - - PREDICTED: ent-kaurenoic acid oxidase 1-like isoform X1 [Jatropha curcas]
4 Hb_108055_010 0.1030635959 - - UDP-glucosyltransferase, putative [Ricinus communis]
5 Hb_000003_620 0.1125470207 - - PREDICTED: ABC transporter G family member 29-like [Jatropha curcas]
6 Hb_000117_110 0.1192800688 - - transferase, putative [Ricinus communis]
7 Hb_000146_110 0.1197959344 - - resveratrol/hydroxycinnamic acid O-glucosyltransferase [Vitis labrusca]
8 Hb_001677_130 0.1233049308 - - hypothetical protein POPTR_0081s002101g, partial [Populus trichocarpa]
9 Hb_000029_180 0.1248308142 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
10 Hb_129399_010 0.1274738975 - - cytochrome P450, putative [Ricinus communis]
11 Hb_010962_030 0.129774153 - - kinase, putative [Ricinus communis]
12 Hb_000398_200 0.1325310956 - - PREDICTED: uncharacterized protein LOC105631579 [Jatropha curcas]
13 Hb_001274_040 0.1365903026 - - PREDICTED: uncharacterized protein LOC105636321 [Jatropha curcas]
14 Hb_000465_380 0.1413717795 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
15 Hb_041290_030 0.1428340519 - - PREDICTED: uncharacterized protein LOC105640874 [Jatropha curcas]
16 Hb_005545_080 0.142980451 - - hypothetical protein JCGZ_01293 [Jatropha curcas]
17 Hb_011925_010 0.1431428755 - - PREDICTED: putative disease resistance protein RGA1 isoform X1 [Jatropha curcas]
18 Hb_000111_130 0.1432801023 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
19 Hb_002890_060 0.1500985177 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Eucalyptus grandis]
20 Hb_009778_030 0.1514299448 transcription factor TF Family: TCP PREDICTED: transcription factor TCP23-like [Populus euphratica]

Gene co-expression network

sample Hb_010327_010 Hb_010327_010 Hb_004712_140 Hb_004712_140 Hb_010327_010--Hb_004712_140 Hb_007371_020 Hb_007371_020 Hb_010327_010--Hb_007371_020 Hb_108055_010 Hb_108055_010 Hb_010327_010--Hb_108055_010 Hb_000003_620 Hb_000003_620 Hb_010327_010--Hb_000003_620 Hb_000117_110 Hb_000117_110 Hb_010327_010--Hb_000117_110 Hb_000146_110 Hb_000146_110 Hb_010327_010--Hb_000146_110 Hb_041290_030 Hb_041290_030 Hb_004712_140--Hb_041290_030 Hb_000331_710 Hb_000331_710 Hb_004712_140--Hb_000331_710 Hb_021596_070 Hb_021596_070 Hb_004712_140--Hb_021596_070 Hb_000398_200 Hb_000398_200 Hb_004712_140--Hb_000398_200 Hb_001677_130 Hb_001677_130 Hb_004712_140--Hb_001677_130 Hb_010962_030 Hb_010962_030 Hb_007371_020--Hb_010962_030 Hb_007371_020--Hb_000003_620 Hb_007371_020--Hb_021596_070 Hb_007371_020--Hb_000146_110 Hb_009778_030 Hb_009778_030 Hb_007371_020--Hb_009778_030 Hb_129399_010 Hb_129399_010 Hb_108055_010--Hb_129399_010 Hb_000465_380 Hb_000465_380 Hb_108055_010--Hb_000465_380 Hb_010921_060 Hb_010921_060 Hb_108055_010--Hb_010921_060 Hb_000029_180 Hb_000029_180 Hb_108055_010--Hb_000029_180 Hb_000333_120 Hb_000333_120 Hb_108055_010--Hb_000333_120 Hb_000003_620--Hb_000146_110 Hb_000003_620--Hb_009778_030 Hb_000111_130 Hb_000111_130 Hb_000003_620--Hb_000111_130 Hb_001363_030 Hb_001363_030 Hb_000003_620--Hb_001363_030 Hb_001365_040 Hb_001365_040 Hb_000003_620--Hb_001365_040 Hb_000117_110--Hb_000398_200 Hb_000117_110--Hb_001677_130 Hb_000117_110--Hb_004712_140 Hb_002218_060 Hb_002218_060 Hb_000117_110--Hb_002218_060 Hb_091913_010 Hb_091913_010 Hb_000117_110--Hb_091913_010 Hb_000146_110--Hb_009778_030 Hb_002890_060 Hb_002890_060 Hb_000146_110--Hb_002890_060 Hb_000146_110--Hb_000111_130 Hb_000123_310 Hb_000123_310 Hb_000146_110--Hb_000123_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 31.942 2.82918 1.41311 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 3.64308 4.2147

CAGE analysis