Hb_010334_040

Information

Type -
Description -
Location Contig10334: 14148-23033
Sequence    

Annotation

kegg
ID pop:POPTR_0009s09750g
description POPTRDRAFT_875052; plant basic secretory family protein
nr
ID XP_011001233.1
description PREDICTED: uncharacterized protein LOC105108579 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A0A0D3HF16
description Uncharacterized protein OS=Oryza barthii PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01321: 22312-23130
cDNA
(Sanger)
(ID:Location)		 017_A14.ab1: 18325-18986

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010334_040 0.0 - - PREDICTED: uncharacterized protein LOC105108579 [Populus euphratica]
2 Hb_000005_350 0.0649904042 - - PREDICTED: uncharacterized protein LOC105634263 [Jatropha curcas]
3 Hb_005116_010 0.0745614294 transcription factor TF Family: bHLH PREDICTED: basic helix-loop-helix protein A [Jatropha curcas]
4 Hb_000025_740 0.083841567 - - PREDICTED: protein TRANSPARENT TESTA 12 isoform X1 [Jatropha curcas]
5 Hb_000684_490 0.0879939184 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 44 [Jatropha curcas]
6 Hb_000471_010 0.1018641882 - - ATP binding protein, putative [Ricinus communis]
7 Hb_005010_040 0.1042657672 - - PREDICTED: uncharacterized protein LOC105630824 [Jatropha curcas]
8 Hb_011861_020 0.1043631458 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_06096 [Jatropha curcas]
9 Hb_001660_040 0.1062854732 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
10 Hb_000589_100 0.1101028668 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
11 Hb_004586_110 0.1102642098 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
12 Hb_009812_010 0.1112160829 - - ABC transporter family protein [Hevea brasiliensis]
13 Hb_001691_060 0.1172316952 - - lipoxygenase, putative [Ricinus communis]
14 Hb_011063_060 0.1229938479 - - PREDICTED: endochitinase-like [Jatropha curcas]
15 Hb_005211_090 0.1233440413 - - PREDICTED: aluminum-activated malate transporter 4-like isoform X1 [Jatropha curcas]
16 Hb_001104_210 0.1261527532 - - hypothetical protein JCGZ_23620 [Jatropha curcas]
17 Hb_009627_040 0.126340722 - - Lipase class 3-related protein, putative [Theobroma cacao]
18 Hb_001454_300 0.1267062806 - - nucleotide binding protein, putative [Ricinus communis]
19 Hb_001922_010 0.1280056839 - - PREDICTED: ABC transporter G family member 8 [Jatropha curcas]
20 Hb_009486_100 0.1287291841 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_010334_040 Hb_010334_040 Hb_000005_350 Hb_000005_350 Hb_010334_040--Hb_000005_350 Hb_005116_010 Hb_005116_010 Hb_010334_040--Hb_005116_010 Hb_000025_740 Hb_000025_740 Hb_010334_040--Hb_000025_740 Hb_000684_490 Hb_000684_490 Hb_010334_040--Hb_000684_490 Hb_000471_010 Hb_000471_010 Hb_010334_040--Hb_000471_010 Hb_005010_040 Hb_005010_040 Hb_010334_040--Hb_005010_040 Hb_011861_020 Hb_011861_020 Hb_000005_350--Hb_011861_020 Hb_000589_100 Hb_000589_100 Hb_000005_350--Hb_000589_100 Hb_000005_350--Hb_000684_490 Hb_116469_010 Hb_116469_010 Hb_000005_350--Hb_116469_010 Hb_001691_060 Hb_001691_060 Hb_000005_350--Hb_001691_060 Hb_005116_010--Hb_005010_040 Hb_009627_040 Hb_009627_040 Hb_005116_010--Hb_009627_040 Hb_009812_010 Hb_009812_010 Hb_005116_010--Hb_009812_010 Hb_010839_010 Hb_010839_010 Hb_005116_010--Hb_010839_010 Hb_005211_090 Hb_005211_090 Hb_005116_010--Hb_005211_090 Hb_002749_070 Hb_002749_070 Hb_000025_740--Hb_002749_070 Hb_000025_740--Hb_000005_350 Hb_001104_210 Hb_001104_210 Hb_000025_740--Hb_001104_210 Hb_004544_070 Hb_004544_070 Hb_000025_740--Hb_004544_070 Hb_164283_010 Hb_164283_010 Hb_000025_740--Hb_164283_010 Hb_000684_490--Hb_000471_010 Hb_004586_110 Hb_004586_110 Hb_000684_490--Hb_004586_110 Hb_000684_490--Hb_011861_020 Hb_000684_490--Hb_116469_010 Hb_000471_010--Hb_004586_110 Hb_000471_010--Hb_011861_020 Hb_150730_010 Hb_150730_010 Hb_000471_010--Hb_150730_010 Hb_000471_010--Hb_116469_010 Hb_000471_010--Hb_000005_350 Hb_005010_040--Hb_009627_040 Hb_006949_030 Hb_006949_030 Hb_005010_040--Hb_006949_030 Hb_000010_200 Hb_000010_200 Hb_005010_040--Hb_000010_200 Hb_002542_090 Hb_002542_090 Hb_005010_040--Hb_002542_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.17861 2.54266 2.11727 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0298542 0 0 14.168 1.96864

CAGE analysis